Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03722 ATGGTGGGGGTTGATGAAAAGAAGAAGAATCTGATGGCTCAACAATATGATGATGGAGGAGTAACTGTGGCATTTCATGGGAGAGAGGTGTACGAGGGTGTTCCTCTTTCCCATTTTTCCAAAAAATCTCCTTTAAACGATAAACAGAACAAGGCGGCTGAGAATAAATACAAGCTCTTGAATAGCCCAACAACACAAGCAACACTTGATGAGACACAATCACCCAAGTTTGCAAGCTCAAATAAAGTGACAACAGATGGGATTATTTCTCGCGGTGAGGCCATATCATCTGCTGTGATTCAAGCCGAAGGACTACGATCACATTTGAAACCAGAATTCCCTAGTTTTGTGAAGTCTTTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGATTGCCTGTGGCATTTTGTAAAAGACACTTACCTGATAAGGATACAACTATCATATTGGAAGATGAATCCGGAAGAGAATACAAAACAAAATATATTGCATGTAAGACAGGCTTAAGCGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTTGTCTTCCAATTAGTTGAACCCACCAAATTTAAGGTTTACATAATAAGAGCTATTAATTCAAGAGAGGTAGATGGAGCCTTTATGAATTTAGACAGTTGCACAAAACAAAAAGGTGGATGTAAAAATATCACAGACACTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAAATGGTAAACATGTTCCACAAGACATCCAAAAGAAAAAGAAAACCATTGCACCAAAAATGGATACTAAGACGAAACAATTTACAGAACAATTTGAAAATGATAGTGACGAAGCATTCTCAGAAATATTCGAGGGATTTAAAATGCCTGAATTCAAAGATTTAAAAGGCTTTAAAAATTTCAGCATTGTAGTAGATGGAATGTCAATCGACGATGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAATTATGTTATAATCAACAAGCTTTTCTTCATGAGAATCTCATCAGAGGATTGAACTACATGCTAATTGTTGGAATTATATCTGAAATTGTTAACATTGCTGATGCAATAAAAGTTAGTGTGATATCTACGCCCCGTGTTGAGTTTTCTAATTGGGATAAAACTTTGCATGCATTTGAGAAATTGGGTATGAATGTTGAATTTTTACGAGTTCGATTGCGCAGGCTTGTAAGCATTGCTTACGAAATGGACAATGCCCCAGAGACAAGAAGATATTTGGCATATAGAACAGAAGATCACAGTCGAGCAGAAAATGAAATTAAGAATATGGAAATTAAGCTTGAAGAATTGAAGGAAGCTTGTAGTGGCTTTGGTGATTATCTTGAGAGTTTGAAACACAAAGCCGAAAGATATGAACATAAGTTTCAGCAAGAAGTTGCTGCTAATTGGTGA 1437 0.3674 MVGVDEKKKNLMAQQYDDGGVTVAFHGREVYEGVPLSHFSKKSPLNDKQNKAAENKYKLLNSPTTQATLDETQSPKFASSNKVTTDGIISRGEAISSAVIQAEGLRSHLKPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTIILEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRAINSREVDGAFMNLDSCTKQKGGCKNITDTDVVACNSPKRKNGKHVPQDIQKKKKTIAPKMDTKTKQFTEQFENDSDEAFSEIFEGFKMPEFKDLKGFKNFSIVVDGMSIDDELSTEVRNKYYKLCYNQQAFLHENLIRGLNYMLIVGIISEIVNIADAIKVSVISTPRVEFSNWDKTLHAFEKLGMNVEFLRVRLRRLVSIAYEMDNAPETRRYLAYRTEDHSRAENEIKNMEIKLEELKEACSGFGDYLESLKHKAERYEHKFQQEVAANW 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03722 478 ProSiteProfiles B3 DNA-binding domain profile. 116 207 IPR003340 GO:0003677
Trre16g03722 478 Pfam B3 DNA binding domain 116 206 IPR003340 GO:0003677
Trre16g03722 478 CDD B3_DNA 114 205 IPR003340 GO:0003677
Trre16g03722 478 Coils Coil 456 476 - -
Trre16g03722 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 93 206 IPR044837 -
Trre16g03722 478 Gene3D - 97 209 IPR015300 -
Trre16g03722 478 SMART B3_2 116 207 IPR003340 GO:0003677
Trre16g03722 478 SUPERFAMILY DNA-binding pseudobarrel domain 109 205 IPR015300 -
Trre16g03722 478 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03722 Trre-Chr16 41761216 41764893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03722 98 222 B3 DNA Binding Superfamily AT3G19184 46.457 2.27e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03722 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03722 - - gmx:100819237 638.647