Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03720 ATGGTGGGGGTTGATGAAAAGAAGAAGAATCTGATGGCTCAACAATATGATGATGGAGGAGTAACTGTGGCATTTCATGGGAGAGAGGATAAACAGAACAAGGCGGCTGAGAATAAATACAAGCTCTTGAATAGCCCAACAACACAAGCAACACTTGATGAGACACAATCACCCAAGTTTGCAAGCTCAAATAAAGTGACAACAGATGGGATTATTTCTCGCGGTGAGGCCATATCATCTGCTGTGATTCAAGCCGAAGGACTACGATCACATTTGAAACCAGAATTCCCTAGTTTTGTGAAGTCTTTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGATTGCCTGTGGCATTTTGTAAAAGACACTTACCTGATAAGGATACAACTATCATATTGGAAGATGAATCCGGAAGAGAATACAAAACAAAATATATTGCATGTAAGACAGGCTTAAGCGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTTGTCTTCCAATTAGTTGAACCCACCAAATTTAAGGTTTACATAATAAGAGCTATTAATTCAAGAGAGGTAGATGGAGCCTTTATGAATTTAGACAGTTGCACAAAACAAAAAGGTGGATGCAAGACTTGTAAAAATATCACAGACACTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAAATGGTAAACATGTTCCACAAGACATCCAAAAGAAAAAGAAAACCATTGCACCAAAAATGGATACTAAGACGAAACAATTTACAGAACAATTTGAAAATGATAGTGACGAAGCATTCTCAGAAATATTCGAGGGATTTAAAATGCCTGAATTCAAAGATTTAAAAGGCTTTAAAAATTTCAGCATTGTAGTAGATGGAATGTCAATCGACGATGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAATTATGTTATAATCAACAAGCTTTTCTTCATGAGAATCTCATCAGAGGATTGAACTACATGCTAATTGTTGGAATTATATCTGAAATTGTTAACATTGCTGATGCAATAAAAGTTAGTGTGATATCTACGCCCCGTGTTGAGTTTTCTAATTGGGATAAAACTTTGCATGCATTTGAGAAATTGGGTATGAATGTTGAATTTTTACGAGTTCGATTGCGCAGGCTTGTAAGCATTGCTTACGAAATGGACAATGCCCCAGAGACAAGAAGATATTTGGCATATAGAACAGAAGATCACAGTCGAGCAGAAAATGAAATTAAGAATATGGAAATTAAGCTTGAAGAATTGAAGGAAGCTTGTAGTGGCTTTGGTGATTATCTTGAGAGTTTGAAACACAAAGCCGAAAGATATGAACATAAGTTTCAGCAAGAAGTTGCTGCTAATTGGTGA 1395 0.367 MVGVDEKKKNLMAQQYDDGGVTVAFHGREDKQNKAAENKYKLLNSPTTQATLDETQSPKFASSNKVTTDGIISRGEAISSAVIQAEGLRSHLKPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTIILEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRAINSREVDGAFMNLDSCTKQKGGCKTCKNITDTDVVACNSPKRKNGKHVPQDIQKKKKTIAPKMDTKTKQFTEQFENDSDEAFSEIFEGFKMPEFKDLKGFKNFSIVVDGMSIDDELSTEVRNKYYKLCYNQQAFLHENLIRGLNYMLIVGIISEIVNIADAIKVSVISTPRVEFSNWDKTLHAFEKLGMNVEFLRVRLRRLVSIAYEMDNAPETRRYLAYRTEDHSRAENEIKNMEIKLEELKEACSGFGDYLESLKHKAERYEHKFQQEVAANW 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03720 464 CDD B3_DNA 97 188 IPR003340 GO:0003677
Trre16g03720 464 Gene3D - 80 192 IPR015300 -
Trre16g03720 464 Pfam B3 DNA binding domain 99 189 IPR003340 GO:0003677
Trre16g03720 464 Coils Coil 442 462 - -
Trre16g03720 464 SMART B3_2 99 190 IPR003340 GO:0003677
Trre16g03720 464 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 89 189 IPR044837 -
Trre16g03720 464 SUPERFAMILY DNA-binding pseudobarrel domain 92 188 IPR015300 -
Trre16g03720 464 Coils Coil 414 434 - -
Trre16g03720 464 ProSiteProfiles B3 DNA-binding domain profile. 99 190 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03720 Trre-Chr16 41761216 41764893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03720 81 205 B3 DNA Binding Superfamily AT3G19184 46.457 1.72e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03720 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03720 - - gmx:100819237 600.512