Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03719 ATGGTGGGGGTTGATGAAAAGAAGAAGAATCTGATGGCTCAACAATATGATGATGGAGGAGTAACTGTGGCATTTCATGGGAGAGAGGATAAACAGAACAAGGCGGCTGAGAATAAATACAAGCTCTTGAATAGCCCAACAACACAAGCAACACTTGATGAGACACAATCACCCAAGTTTGCAAGCTCAAATAAAGTGACAACAGATGGGATTATTTCTCGCGGTGAGGCCATATCATCTGCTGTGATTCAAGCCGAAGGACTACGATCACATTTGAAACCAGAATTCCCTAGTTTTGTGAAGTCTTTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGATTGCCTGTGGCATTTTGTAAAAGACACTTACCTGATAAGGATACAACTATCATATTGGAAGATGAATCCGGAAGAGAATACAAAACAAAATATATTGCATGTAAGACAGGCTTAAGCGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTTGTCTTCCAATTAGTTGAACCCACCAAATTTAAGGTTTACATAATAAGAGCTATTAATTCAAGAGAGGTAGATGGAGCCTTTATGAATTTAGACAGTTGCACAAAACAAAAAGGTGGATGTAAAAATATCACAGACACTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAAATGGTAAACATGTTCCACAAGACATCCAAAAGAAAAAGAAAACCATTGCACCAAAAATGGATACTAAGACGAAACAATTTACAGAACAATTTGAAAATGATAGTGACGAAGCATTCTCAGAAATATTCGAGGGATTTAAAATGCCTGAATTCAAAGATTTAAAAGGCTTTAAAAATTTCAGCATTGTAGTAGATGGAATGTCAATCGACGATGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAATTATGTTATAATCAACAAGCTTTTCTTCATGAGAATCTCATCAGAGGATTGAACTACATGCTAATTGTTGGAATTATATCTGAAATTGTTAACATTGCTGATGCAATAAAAGTTAGTGTGATATCTACGCCCCGTGTTGAGTTTTCTAATTGGGATAAAACTTTGCATGCATTTGAGAAATTGGGTATGAATGTTGAATTTTTACGAGTTCGATTGCGCAGGCTTGTAAGCATTGCTTACGAAATGGACAATGCCCCAGAGACAAGAAGATATTTGGCATATAGAACAGAAGATCACAGTCGAGCAGAAAATGAAATTAAGAATATGGAAATTAAGCTTGAAGAATTGAAGGAAGCTTGTAGTGGCTTTGGTGATTATCTTGAGAGTTTGAAACACAAAGCCGAAAGATATGAACATAAGTTTCAGCAAGAAGTTGCTGCTAATTGGTGA 1386 0.3665 MVGVDEKKKNLMAQQYDDGGVTVAFHGREDKQNKAAENKYKLLNSPTTQATLDETQSPKFASSNKVTTDGIISRGEAISSAVIQAEGLRSHLKPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTIILEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRAINSREVDGAFMNLDSCTKQKGGCKNITDTDVVACNSPKRKNGKHVPQDIQKKKKTIAPKMDTKTKQFTEQFENDSDEAFSEIFEGFKMPEFKDLKGFKNFSIVVDGMSIDDELSTEVRNKYYKLCYNQQAFLHENLIRGLNYMLIVGIISEIVNIADAIKVSVISTPRVEFSNWDKTLHAFEKLGMNVEFLRVRLRRLVSIAYEMDNAPETRRYLAYRTEDHSRAENEIKNMEIKLEELKEACSGFGDYLESLKHKAERYEHKFQQEVAANW 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03719 461 Coils Coil 439 459 - -
Trre16g03719 461 Gene3D - 80 192 IPR015300 -
Trre16g03719 461 CDD B3_DNA 97 188 IPR003340 GO:0003677
Trre16g03719 461 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 89 189 IPR044837 -
Trre16g03719 461 Pfam B3 DNA binding domain 99 189 IPR003340 GO:0003677
Trre16g03719 461 Coils Coil 411 431 - -
Trre16g03719 461 SMART B3_2 99 190 IPR003340 GO:0003677
Trre16g03719 461 SUPERFAMILY DNA-binding pseudobarrel domain 92 188 IPR015300 -
Trre16g03719 461 ProSiteProfiles B3 DNA-binding domain profile. 99 190 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03719 Trre-Chr16 41761216 41764893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03719 81 205 B3 DNA Binding Superfamily AT3G19184 46.457 1.77e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03719 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03719 - - gmx:100819237 611.683