Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03717 ATGGATGTTCCCATTTGGAATGATAACATTGTTCCAACATCACTATTACCAAATAAAGAAGAAGAAAATTCTATCATAGTATCTACTCTCGTCAACGTTCTTTCCTCGTCCAACTCCAACAACAATGTTAATGTTAATGTTCCTGTTACTTATGTTTCTGTTTCAGATAAAGAAGCAGCCACGTCATCATATTCAAGTGGGTCCCTTTCTTTCTTGTCTTACGAGAACAGCGAGTACGATGTTAACACGTGTAATGCATGTAAAATCAACGGCTGTCTCGGATGCAGATTATTTGCTGAAAAGGATAAAGAGGAAGAGAAAAAGAAGAAAAAATACAGAGGAGTGAGACAGAGAGCATGGGGAAAATGGGTGGCTGAGATTAGAGACCCAAAAAGAGCGACACGTGTATGGCTAGGAACATTTCAAACTGCGGAGAATGCAGCAAGAGCTTATGATGAAGCTGCTATTAAGTTTCATGGTGTTAGAGCTAAACTCAATTTTGAATTCTCTGATTATAATATTGATGAGAAGAAGCAAAGTGAAAATGTTATGATGAAACAAAGAAAAAGTAAGATAATATCATTTGGGTCTACAAGTGAACAACAAGACTAG 612 0.3693 MDVPIWNDNIVPTSLLPNKEEENSIIVSTLVNVLSSSNSNNNVNVNVPVTYVSVSDKEAATSSYSSGSLSFLSYENSEYDVNTCNACKINGCLGCRLFAEKDKEEEKKKKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFQTAENAARAYDEAAIKFHGVRAKLNFEFSDYNIDEKKQSENVMMKQRKSKIISFGSTSEQQD 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03717 203 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Trre16g03717 203 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Trre16g03717 203 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
Trre16g03717 203 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Trre16g03717 203 FunFam Ethylene-responsive transcription factor 2 110 169 - -
Trre16g03717 203 CDD AP2 112 168 IPR001471 GO:0003700|GO:0006355
Trre16g03717 203 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Trre16g03717 203 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Trre16g03717 203 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Trre16g03717 203 PANTHER DNA-BINDING DOMAIN 63 179 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03717 Trre-Chr16 41740733 41741344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03717 18 172 AP2-EREBP Transcription Factor Family AT4G34410 40.838 6.41e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g03717 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03717 - - tpra:123922784 259.996