LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g03714	ATGTCGCAGCGGTCGGCGCCGGCGCCGTTTTTGAGCAAGACTTATGAGATGGTGGATGATCCTCTCACTGATGATGTGATTTCTTGGGGTGAAAATGGCAACACTTTTGTTGTGTTGAAACATGCTGAATTTGCTAGGGATTTGCTTCCAAAGTACTTTAAGCACAACAATTTCTCAAGCTTTGTTCGCCAACTCAACACCTATGGGTTCCGAAAAATTGTTCCTGATAAATGGGAATTTGCCAACGAGAATTTCAAGCGAGGACATAGGCAGCTACTGGCAACAATGAAGCGTCGGAAGGCCCTATCGCCTGTGACTGGAAGACCCATCGGCATTGGACTGAACTCAACGTCTAACTCTGGCGGTGAAGACATGGGTTCGACCTCAACTGGATCAGTGGAACGAAATACCTATTTCGCTGACTTATCGAGCGAGAACGAGAAACTGAAAAAGGACAACGAGAAATTGAGCATTGAATTAGCACTTGCGAAGAAGCAATGTGAACAGTTGGTGGCTTTTCTTCAAAATGTTACTAGTGTATCGCCCGATCAGATTAACCACATCATTCGGCAAGGAACAAGTGGGTCCAGCCTCGATGGGGTGCTTTCTTACGATGACTTGAATGCGACACCAGTAGGTGAAGGTAATAAATGTGAGGGTCTGAAACTATTTGGTGTGAGGATTGACATGACTAACGCTAAGGGTGACTGTCGCAAGAGAGGGCGTGAAGTGTCAATTGATGGTGCCAACAACAAGTTGAAGACTGTTGTTTAG	774	0.4574	MSQRSAPAPFLSKTYEMVDDPLTDDVISWGENGNTFVVLKHAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGHRQLLATMKRRKALSPVTGRPIGIGLNSTSNSGGEDMGSTSTGSVERNTYFADLSSENEKLKKDNEKLSIELALAKKQCEQLVAFLQNVTSVSPDQINHIIRQGTSGSSLDGVLSYDDLNATPVGEGNKCEGLKLFGVRIDMTNAKGDCRKRGREVSIDGANNKLKTVV	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g03714	257	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre16g03714	257	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Trre16g03714	257	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	4	192	IPR027725	-
	Trre16g03714	257	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre16g03714	257	Gene3D	-	132	178	-	-
	Trre16g03714	257	Gene3D	-	2	100	IPR036388	-
	Trre16g03714	257	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre16g03714	257	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre16g03714	257	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre16g03714	257	SUPERFAMILY	"Winged helix" DNA-binding domain	6	99	IPR036390	-
	Trre16g03714	257	Coils	Coil	139	166	-	-
	Trre16g03714	257	MobiDBLite	consensus disorder prediction	112	131	-	-
	Trre16g03714	257	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g03714	Trre-Chr16	41694602	41698831	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g03714	2	243	HSF	AT4G36990	51.575	1.92e-72	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trre16g03714		HSF_DNA-bind	1.3e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g03714	K09419		-	gmx:100801638	303.908