Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03706 ATGGATGTGGACATAGTGAAAACTTCTAGTGATGGTAGCATGGACATGATATCAATGATGATGCAAATGGAAAACTTTCCTGATCAGTTTTCTGAACCTTTTTACAACACTCCCACTACTTACCAAGAAATCATCACCAATAATAACACTGTTCCATTATTTAACCACCAAAATGCACTATCATCTCCACAAACTTTGAATAATATTGATCCAAATCTACACTCCAATGTCAACTTCCAACAACAGTTGAATATCACACCATCAACTCTTCATAGTAACTCTTCATCATTTCCTTACTCGAACTCCTCGAATTCTTCTGATAAGAAGAATTCGATGGCAGCGATGAGGGAAATGATATTTAGGATAGCCGTGATGCAACCGATACATATTGATCCGGAATCTATTAGGCCACCGAAGAGAAGGAACATGAAGATATCAAAGGATCCACAAAGCGTAGCGGCGCGACATAGAAGGGAAAGGATAAGTGAGAGGATAAGGATATTACAAAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACATTATGTGAAGTTCTTGAAGAAACAAGTTCAAACATTGGAACAAGTAGGTGCTAATAATAATAGATCATCACAAATGTCACACATTGGTGGTGGTGTTATGAACAACTTTAATGTGAATTATTCTGGTTTGATGATGAAGGGTTGTCAACCTTTTCAAATGGTGGGGTCCACTTCTAAACAATTGCTTAGCTAG 759 0.3742 MDVDIVKTSSDGSMDMISMMMQMENFPDQFSEPFYNTPTTYQEIITNNNTVPLFNHQNALSSPQTLNNIDPNLHSNVNFQQQLNITPSTLHSNSSSFPYSNSSNSSDKKNSMAAMREMIFRIAVMQPIHIDPESIRPPKRRNMKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANNNRSSQMSHIGGGVMNNFNVNYSGLMMKGCQPFQMVGSTSKQLLS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03706 252 Gene3D - 143 216 IPR036638 GO:0046983
Trre16g03706 252 CDD bHLH_AtIND_like 146 202 - -
Trre16g03706 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Trre16g03706 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 241 IPR045843 GO:0003700|GO:0006355
Trre16g03706 252 MobiDBLite consensus disorder prediction 132 157 - -
Trre16g03706 252 MobiDBLite consensus disorder prediction 88 111 - -
Trre16g03706 252 SMART finulus 151 200 IPR011598 GO:0046983
Trre16g03706 252 FunFam BHLH transcription factor 148 212 - -
Trre16g03706 252 Pfam Helix-loop-helix DNA-binding domain 155 194 IPR011598 GO:0046983
Trre16g03706 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 206 IPR036638 GO:0046983
Trre16g03706 252 MobiDBLite consensus disorder prediction 133 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03706 Trre-Chr16 41489233 41489991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03706 10 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.338 1.15e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g03706 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03706 - - gmx:100800816 254.218