Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03699 ATGCATTTACCATTGAAAAGAACATCCACCCAAAGAGAAATTGGTGAAAGTTCAAGCTTAAGTGTTCATGCAGAAATTCCATCAAATCACAATGCACACAATATTAATCAAGGAAATACCATAATTGCCCCTCAAGCCAGGAGGGGAGCCTTCTACCTTATGAGTCTTCTCAATCACCATGATCTTGAATGGGTGCCTCAGATCAACATGAATCAACAAGAATATCATCATAGTACTAGAATAGTTGATTCACCTTTTGCTTCAATGGCTAGTAGAAGTTCCATGTTGGAGAACCAATATAGTTCTAGTTCAACAAGTACTTCAATTCAAGTTGGTGGAAATGATGAGCAGCAACCTCATATTATGTCAACATGTGATCCTGAACTAATTGAGATTGAGACTATCATGGAACGAATACATATCGGTCAACTTTTGAGACTCCAGTTGCAAAGGAGACATATTCGAACTGAAAGAGGGCTTACAGAGGACGAAATAATAAAGTGTATTAGTTTTAGAAACTTTGAGGCCACAATCGATGGAACATCAGAAAATAAAGAATTGTGTTGCATTTGTCAGGAGGAATACCTAATCGGTGAAGAAATTGGAAAGTTAGACTGTGCGCACATTTTTCACGTGAATTGCATCAAACAGTGGCTTGCAGAAAAGAACATATGTCCGCTTTGTTATCGTAAGGGATTGTTTGTTGTCGGTGATGTAATTGATGGTTGCTAA 732 0.3784 MHLPLKRTSTQREIGESSSLSVHAEIPSNHNAHNINQGNTIIAPQARRGAFYLMSLLNHHDLEWVPQINMNQQEYHHSTRIVDSPFASMASRSSMLENQYSSSSTSTSIQVGGNDEQQPHIMSTCDPELIEIETIMERIHIGQLLRLQLQRRHIRTERGLTEDEIIKCISFRNFEATIDGTSENKELCCICQEEYLIGEEIGKLDCAHIFHVNCIKQWLAEKNICPLCYRKGLFVVGDVIDGC 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03699 243 Pfam Ring finger domain 188 228 IPR001841 -
Trre16g03699 243 SUPERFAMILY RING/U-box 181 232 - -
Trre16g03699 243 SMART ring_2 188 228 IPR001841 -
Trre16g03699 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Trre16g03699 243 ProSiteProfiles Zinc finger RING-type profile. 188 228 IPR001841 -
Trre16g03699 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 228 IPR045191 GO:0061630
Trre16g03699 243 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03699 Trre-Chr16 41374320 41376562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03699 147 233 C3H Transcription Factor Family AT2G15530 41.111 3.69e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03699 - - tpra:123922779 255.373