Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03685 ATGGCATCCATCAAACTCATATCAACCACTACAATTCAAGCACCTAGTCACATTAACACCAACTCAACACAAAAAATCCATTTGACTCCATGGGACCTCTCATCACTCCAAGTTGAAATGAACCAAAAAGGACTTCTCTTTCACAATGATCCCCAAAACCCAAAAAACACATCAAACCAAATCCAACATCTCAAAAACTCACTTTCCTCAACTCTTGCTTTCTTTCCACCCCTCACAGGTCGTCTCATTATTAATCGTCACGACGACGACAACAATAACGACAAAAACTCATGTTTCATTCTTTGCAACAACCTAGGTGCTTTGTTTATCCATGCAATAGCTGAAAACACAAGTGTTTCTGACATTCTTAAACCAAACTATGTTCCTCCAATTGTTCACTCTTTTTTTCCATTCAATAAAGTCAAAAATTGTGAAGGCACATCAAAACCATTGCTTGCAATTCAAGTCACTGAGCTTGTTGATGGTATCTTTATTGGATTTTCAATCAATCATGTCGTTGTTGATGGTAAGTCGTTTTGGCATTTCATTAATTCATGGGCTGAAATTTCGCGTGGTTTTGATCAACCATCGAAACTTCCTACACTTAATCGTTGGTTTCTCGACGACTCAATTGAAATTCCTATAAAATTTCCTTTCACAAAGGAGGAAAACAAAAAAAGTTCCGAAATTGATGAAATTTTTATTCCACCTGAGAGGATTTTCCATTTCACAAAGGAAAAAATTGCGAAACTCAAATCGAAAGCTAATTTAGAGGCTAATACAAACAAAATATCTTCTCTACAAGCGCTTTTAACTCACCTTTGGCGAGCTGTGATTCGTTGTCAGAATATCGACCCTGAAGAAGAAATCATGTATTGTTTAGTCATTGATGTTAGAGGCAGAGTTGTTCCGCCGTTGCCTGATAATTACTTTGGAAATGCATTGCAAGTTGGTGGTGTGAAAGTGAAAGCAAAGGAATTACTTGTTGAAGGAGGGTTTGGAAAAATTGCTTTTGAGATGAACAAAATGATAGGTTCACATTGTGGTGATACTGTGAAGAGAAACTATGAAAATTGGGTGAAAAATCCAATGTTGTTTCAAGGTAGGCTTAGTAATGTTAAGGCTTTGGCAACTAGTAGTTCTCCAAGGTTCAATGTTTATGGTAATGACTTTGGTTGGGGTAAGCCTGTTGCTGTTAGAAGTGGGGGTGCAAATAAAAGTGATGGAACTATAACTATGTTTAGTGGAGAAGAAGAAGGTAGTATTGATATTGAAGTTTGTCTTTCTTATCATATTTTGGAGGCCATGGGAAATGATCTTGAATTCACACATATATGTTCTAATTAG 1347 0.3667 MASIKLISTTTIQAPSHINTNSTQKIHLTPWDLSSLQVEMNQKGLLFHNDPQNPKNTSNQIQHLKNSLSSTLAFFPPLTGRLIINRHDDDNNNDKNSCFILCNNLGALFIHAIAENTSVSDILKPNYVPPIVHSFFPFNKVKNCEGTSKPLLAIQVTELVDGIFIGFSINHVVVDGKSFWHFINSWAEISRGFDQPSKLPTLNRWFLDDSIEIPIKFPFTKEENKKSSEIDEIFIPPERIFHFTKEKIAKLKSKANLEANTNKISSLQALLTHLWRAVIRCQNIDPEEEIMYCLVIDVRGRVVPPLPDNYFGNALQVGGVKVKAKELLVEGGFGKIAFEMNKMIGSHCGDTVKRNYENWVKNPMLFQGRLSNVKALATSSSPRFNVYGNDFGWGKPVAVRSGGANKSDGTITMFSGEEEGSIDIEVCLSYHILEAMGNDLEFTHICSN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03685 448 Pfam Transferase family 3 442 - -
Trre16g03685 448 Gene3D - 237 441 IPR023213 -
Trre16g03685 448 Gene3D - 2 211 IPR023213 -
Trre16g03685 448 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03685 Trre-Chr16 41218750 41220096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03685 53 428 Monolignol Biosynthesis Gene Families AT5G48930 27.182 1.84e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03685 - - gmx:100500257 533.102