Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03678 ATGTGGGATCTTAATGGTTCACCGTTTAAGAGAAAAGAAGAAGAATCTGAAAGATGTTCTAAGACATCAATAGATGATGGAGATGATGAAAAAGGAAAAAGGGTTGGTGGATCTGTTTCAAATTCAAGCTCTTCTGCTATAGTAATCGAAGAAGATTCAGAAGAAGATCAACAACAACAACAACCTAAAAACAGAACCATCATGATGATGATGAAAAAAAGAAACAACAGTAAAATATTTGGTTTCTCTGTCACTCATGATGAAGATGAAGAAGAAGATTCTTTAGACAGTGAAAATTTTCCTGTTACAAGAAATTTCTTTCCTATGGATCAAGATTCTTCTGATAATAACATGGTTGTTGAAAATGGAGGAACAACTTGTTCTTCTGCAAATTTTCCTCGTGCTCATTGGGTTGGTGTTAAATTTTGTCAATCAGAAACACTTGGAAGTGGAAAATCAGTTGAAGTTTCAACTTCTTCTTCACAACCTATGAAGAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCACAATATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGAGTTGAGGCTGACATAAATTTTAACATAGAAGATTATGAAGAAGATTTGAAGCAGATGAGTAATTTGACAAAGGAAGAGTTTGTACACGTACTTAGGAGACAAAGCACTGGATTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAAGCTAGAATGGGACAATTCTTAGGAAAAAAGTATGTTTATCTGGGTTTGTTTGACACTGAGGTTGAAGCTGCAAGGGCTTATGATAAAGCAGCAATAAAATGCAACGGAAAAGAAGCCGTCACAAATTTTGATCCTAGCATCTATGATAGTGAGCTTAATTCTGAACCATCAAGTAACGCTAGTGATCACAATTTGGATTTAAGTTTGGGAAACTCAAGTTCAAAATCCATCAATAATGCTCAAACATATGGGAATCATCACACTTCAAATGTTGCAAATCATGCATCTGATCAATCTAATTGGCAAAATGGTGGAAACATAAACAAGCCTAAGCTTGTGAATATTCTACCAAAACCATATAATAGACCAAACAACATGGAAGCATATGGAAGAGATTTGCATGGAGAGAATGAAGCTTTAAGGATGCTAAGTCAAACTCATCTTCATTCTTCATCTTCTAATGAAATGCATAGATATGGTCCCTTTAGAGATCACTCACAAATGCTTCATAGTTTCCCACATACTTACCCACCAAATTTTCATTTTCCCAGCAGCAGTTATGGAGGCCGAGTGGGAAGCGATCTTTCATTATCAACAAGCAATCAACAACAACAATGGCAATCAGGGCCACATTATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCCTCTTCTTCTTCTCAAGCTTGGCTGCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTGA 1596 0.3709 MWDLNGSPFKRKEEESERCSKTSIDDGDDEKGKRVGGSVSNSSSSAIVIEEDSEEDQQQQQPKNRTIMMMMKKRNNSKIFGFSVTHDEDEEEDSLDSENFPVTRNFFPMDQDSSDNNMVVENGGTTCSSANFPRAHWVGVKFCQSETLGSGKSVEVSTSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNSEPSSNASDHNLDLSLGNSSSKSINNAQTYGNHHTSNVANHASDQSNWQNGGNINKPKLVNILPKPYNRPNNMEAYGRDLHGENEALRMLSQTHLHSSSSNEMHRYGPFRDHSQMLHSFPHTYPPNFHFPSSSYGGRVGSDLSLSTSNQQQQWQSGPHYLATAAAASSGFPPQIRPSSSSQAWLHKNGFHTLMRPS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03678 531 MobiDBLite consensus disorder prediction 151 178 - -
Trre16g03678 531 SUPERFAMILY DNA-binding domain 176 234 IPR016177 GO:0003677
Trre16g03678 531 ProSiteProfiles AP2/ERF domain profile. 177 233 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 FunFam AP2-like ethylene-responsive transcription factor 176 235 - -
Trre16g03678 531 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Trre16g03678 531 MobiDBLite consensus disorder prediction 1 64 - -
Trre16g03678 531 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 100 426 - -
Trre16g03678 531 MobiDBLite consensus disorder prediction 151 166 - -
Trre16g03678 531 SMART rav1_2 269 332 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 SMART rav1_2 177 239 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 MobiDBLite consensus disorder prediction 333 401 - -
Trre16g03678 531 MobiDBLite consensus disorder prediction 333 391 - -
Trre16g03678 531 CDD AP2 268 328 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 ProSiteProfiles AP2/ERF domain profile. 269 326 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 Pfam AP2 domain 268 317 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 Pfam AP2 domain 177 225 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 Gene3D AP2/ERF domain 268 327 IPR036955 GO:0003700|GO:0006355
Trre16g03678 531 Gene3D AP2/ERF domain 176 235 IPR036955 GO:0003700|GO:0006355
Trre16g03678 531 CDD AP2 177 234 IPR001471 GO:0003700|GO:0006355
Trre16g03678 531 MobiDBLite consensus disorder prediction 1 35 - -
Trre16g03678 531 FunFam AP2-like ethylene-responsive transcription factor 268 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03678 Trre-Chr16 41125476 41128658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03678 1 355 AP2-EREBP Transcription Factor Family AT4G36920 65.479 1.27e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g03678 AP2 9.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03678 K09284 - gmx:100792442 696.427