Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre16g03677 | ATGTGGGATCTTAATGGTTCACCGTTTAAGAGAAAAGAAGAAGAATCTGAAAGATGTTCTAAGACATCAATAGATGATGGAGATGATGAAAAAGGAAAAAGGGTTGGTGGATCTGTTTCAAATTCAAGCTCTTCTGCTATAGTAATCGAAGAAGATTCAGAAGAAGATCAACAACAACAACAACCTAAAAACAGAACCATCATGATGATGATGAAAAAAAGAAACAACAGTAAAATATTTGGTTTCTCTGTCACTCATGATGAAGATGAAGAAGAAGATTCTTTAGACAGTGAAAATTTTCCTGTTACAAGAAATTTCTTTCCTATGGATCAAGATTCTTCTGATAATAACATGGTTGTTGAAAATGGAGGAACAACTTGTTCTTCTGCAAATTTTCCTCGTGCTCATTGGGTTGGTGTTAAATTTTGTCAATCAGAAACACTTGGAAGTGGAAAATCAGTTGAAGTTTCAACTTCTTCTTCACAACCTATGAAGAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCACAATATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGAGTTGAGGCTGACATAAATTTTAACATAGAAGATTATGAAGAAGATTTGAAGCAGATGAGTAATTTGACAAAGGAAGAGTTTGTACACGTACTTAGGAGACAAAGCACTGGATTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAAGCTAGAATGGGACAATTCTTAGGAAAAAAGTATGTTTATCTGGGTTTGTTTGACACTGAGGTTGAAGCTGCAAGGGCTTATGATAAAGCAGCAATAAAATGCAACGGAAAAGAAGCCGTCACAAATTTTGATCCTAGCATCTATGATAGTGAGCTTAATTCTGCAGAACCATCAAGTAACGCTAGTGATCACAATTTGGATTTAAGTTTGGGAAACTCAAGTTCAAAATCCATCAATAATGCTCAAACATATGGGAATCATCACACTTCAAATGTTGCAAATCATGCATCTGATCAATCTAATTGGCAAAATGGTGGAAACATAAACAAGCCTAAGCTTGTGAATATTCTACCAAAACCATATAATAGACCAAACAACATGGAAGCATATGGAAGAGATTTGCATGGAGAGAATGAAGCTTTAAGGATGCTAAGTCAAACTCATCTTCATTCTTCATCTTCTAATGAAATGCATAGATATGGTCCCTTTAGAGATCACTCACAAATGCTTCATAGTTTCCCACATACTTACCCACCAAATTTTCATTTTCCCAGCAGCAGTTATGGAGGCCGAGTGGGAAGCGATCTTTCATTATCAACAAGCAATCAACAACAACAATGGCAATCAGGGCCACATTATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCCTCTTCTTCTTCTCAAGCTTGGCTGCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTGA | 1599 | 0.3715 | MWDLNGSPFKRKEEESERCSKTSIDDGDDEKGKRVGGSVSNSSSSAIVIEEDSEEDQQQQQPKNRTIMMMMKKRNNSKIFGFSVTHDEDEEEDSLDSENFPVTRNFFPMDQDSSDNNMVVENGGTTCSSANFPRAHWVGVKFCQSETLGSGKSVEVSTSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNSAEPSSNASDHNLDLSLGNSSSKSINNAQTYGNHHTSNVANHASDQSNWQNGGNINKPKLVNILPKPYNRPNNMEAYGRDLHGENEALRMLSQTHLHSSSSNEMHRYGPFRDHSQMLHSFPHTYPPNFHFPSSSYGGRVGSDLSLSTSNQQQQWQSGPHYLATAAAASSGFPPQIRPSSSSQAWLHKNGFHTLMRPS | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre16g03677 | 532 | MobiDBLite | consensus disorder prediction | 151 | 178 | - | - | |
| Trre16g03677 | 532 | SUPERFAMILY | DNA-binding domain | 176 | 234 | IPR016177 | GO:0003677 | |
| Trre16g03677 | 532 | ProSiteProfiles | AP2/ERF domain profile. | 177 | 233 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | FunFam | AP2-like ethylene-responsive transcription factor | 176 | 235 | - | - | |
| Trre16g03677 | 532 | SUPERFAMILY | DNA-binding domain | 268 | 328 | IPR016177 | GO:0003677 | |
| Trre16g03677 | 532 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Trre16g03677 | 532 | MobiDBLite | consensus disorder prediction | 151 | 166 | - | - | |
| Trre16g03677 | 532 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 100 | 427 | - | - | |
| Trre16g03677 | 532 | MobiDBLite | consensus disorder prediction | 333 | 389 | - | - | |
| Trre16g03677 | 532 | SMART | rav1_2 | 177 | 239 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | SMART | rav1_2 | 269 | 332 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | Pfam | AP2 domain | 268 | 317 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | Pfam | AP2 domain | 177 | 225 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | CDD | AP2 | 268 | 328 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | PRINTS | Ethylene responsive element binding protein signature | 308 | 328 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | PRINTS | Ethylene responsive element binding protein signature | 270 | 281 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | ProSiteProfiles | AP2/ERF domain profile. | 269 | 326 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | Gene3D | AP2/ERF domain | 268 | 327 | IPR036955 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | Gene3D | AP2/ERF domain | 176 | 235 | IPR036955 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | CDD | AP2 | 177 | 234 | IPR001471 | GO:0003700|GO:0006355 | |
| Trre16g03677 | 532 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Trre16g03677 | 532 | FunFam | AP2-like ethylene-responsive transcription factor | 268 | 328 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre16g03677 | Trre-Chr16 | 41125476 | 41128658 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre16g03677 | 1 | 356 | AP2-EREBP Transcription Factor Family | AT4G36920 | 65.574 | 2.26e-128 | 380 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | AP2 or ERF-AP2 | Trre16g03677 | AP2 | 9.2e-10 | CL0081 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre16g03677 | K09284 | - | gmx:100792442 | 691.804 |