Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03671 ATGCATAGTTTAATAACACTCTTCTATCTCTTCTTTTACTTCACCTTCACATTTTCTTCCTCTACAAACTCCACCCTCCATCAAGACGCAGTATCTCTACTGTCCTTCAAACAAAACGCAGACCAAAACAACAAACTTCTCTACACACTAAACGAACCTTACGACTACTGCGAATGGCAAGGAGTTAAATGTGCACAAGGCAGAGTAGTCCGCTACGTGGTTCAAGGCTTAAACCTTCACGGTTTTTTCTCTCCAAACACTCTAACCCGGCTCCACCAACTCCGAGTCATGAGTCTTCGTAATAATTCCTTATTCGGACCCATTCCGGATCTATCACCACTCATTAATCTCAAGTCGCTCTTTTTGGACCATAACAATTTCTCCTGTTCATTTCCTCCTTCTATTATTTTTCTCCATAGACTCATTACTCTTTCGCTCTCTCATAATAATCTCACTGGTTTACTTCCGGTTCAGTTAACTCTTCTGGACCGTCTCATTATACTTCGGCTTGACTCAAACTCATTCACCGGTCCTCTTCCACCTCTCAACCAAACCGATTTAAAAGCATTTAACATCTCCGCCAATAATTTTACTGGTCCTGTTCCTGTCACTGAAACTCTTTCCCGGTTTAAACCGGCTTTGTTTTCAGAAAATCCGGATCTCTGTGGTGAGATTATTCATAAACAATGCGCTCATCGTTCTAGATTCTTCGGTTCAAATGCCACTGCTCCGTTGAGTCAGAGCGAGGAATCACAAGGAATTGTGGTGGTTCCATCTTCTTCAAAGAACAAGAAGAATCATAAGAAAACCGGTTTGATTCTCGGTTTCACCGTCACTGTTGCGATTATTGCTGTGTTTTCAGTAATTGTAATTGCATTGATAAAAAAGCAGAACACCGGAGGAAAATCTAAGTCGCCGGAAACAGAAATAGAAACTTCACCGGCGGCGGTAGTGGAGGTGAGAACTGAAGTTGAAACAGATACGAAGGTGAAGAAGATGGAGGAAGCTCATCGGAGTGGGAAGTTAGTGTTCTGCTGCGGTGAGATGCAGGATTATACGCTGGAGCAGCTGATGAGAGCTTCGGCGGAGCTTTTGGGAAGAGGGAGTGTGGGGACCACTTATAAGGCGGTGATGGATTCGCAGTTGATATTGACGGTGAAGAGGTTGGACGCTGGAAAAACTGGTGTGACGAGTGGGGAGGTTTTTCAGAAGCATATGGAGATTGTTGGTAGACTTCGTCACCCTAATTTGGTTACTTTGAAGGCTTTTTTTCAAGCTAAAGGAGAGAGACTTGTTATCTATGATTATCAACCTAATGGAAGTCTCTTCAATCTAATTCATGGTTCAAGATCGGCGAGAGCGAAGCCACTGCATTGGACATCATGCTTAAAAATAGCAGAAGATGTAGCTCATGGACTTGCTTATATACATCAAGTTTCGTCTTTGATTCATGGCAACCTAAAATCCTCTAATGTCCTTCTTGGAGGTGACTTTGAAGCTTGTGTAACCGACTATTGTTTGGCCTTCCTTACAGATTCTTCATTTACAGAAGATCCTGATGCTGCAGCCTATAAAGCGCCAGAGGTTCGGAAATCTAACCGCAGGGCGACTTCAAAGTCTGATGTGTACGCTTTTGGTGTATTGCTGTTGGAGCTTTTGACGGGTAAACATCCTTCCAAACACCCTTTCCTTGCGCCAACGGATTTGCAAGATTGGGTTAAAGCAATGAGGGACGATGATTTTAGTGAAGATAACAGGGTAGAAATGCTCACCGAGGTTGCCAGTATTTGCAGTGCAACTTCCCCCGAGCAGAGACCGGCTATGTGGCAAGTTCTTAAGATGATACAAGGAATAAAAGATAGTGTTTCAATGGAGGACATTGTACCCACCGGACTGTCATAG 1902 0.4343 MHSLITLFYLFFYFTFTFSSSTNSTLHQDAVSLLSFKQNADQNNKLLYTLNEPYDYCEWQGVKCAQGRVVRYVVQGLNLHGFFSPNTLTRLHQLRVMSLRNNSLFGPIPDLSPLINLKSLFLDHNNFSCSFPPSIIFLHRLITLSLSHNNLTGLLPVQLTLLDRLIILRLDSNSFTGPLPPLNQTDLKAFNISANNFTGPVPVTETLSRFKPALFSENPDLCGEIIHKQCAHRSRFFGSNATAPLSQSEESQGIVVVPSSSKNKKNHKKTGLILGFTVTVAIIAVFSVIVIALIKKQNTGGKSKSPETEIETSPAAVVEVRTEVETDTKVKKMEEAHRSGKLVFCCGEMQDYTLEQLMRASAELLGRGSVGTTYKAVMDSQLILTVKRLDAGKTGVTSGEVFQKHMEIVGRLRHPNLVTLKAFFQAKGERLVIYDYQPNGSLFNLIHGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQVSSLIHGNLKSSNVLLGGDFEACVTDYCLAFLTDSSFTEDPDAAAYKAPEVRKSNRRATSKSDVYAFGVLLLELLTGKHPSKHPFLAPTDLQDWVKAMRDDDFSEDNRVEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSVSMEDIVPTGLS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03671 633 Gene3D Transferase(Phosphotransferase) domain 1 438 628 - -
Trre16g03671 633 Pfam Protein kinase domain 362 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03671 633 SUPERFAMILY Protein kinase-like (PK-like) 363 620 IPR011009 -
Trre16g03671 633 Gene3D Ribonuclease Inhibitor 184 233 IPR032675 -
Trre16g03671 633 SUPERFAMILY L domain-like 27 223 - -
Trre16g03671 633 SMART serkin_6 359 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03671 633 Gene3D Phosphorylase Kinase; domain 1 323 436 - -
Trre16g03671 633 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 621 IPR046959 -
Trre16g03671 633 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Trre16g03671 633 ProSiteProfiles Protein kinase domain profile. 359 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03671 Trre-Chr16 41005050 41008346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03671 23 626 Receptor kinase-like Gene Family AT3G50230 53.628 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre16g03671 Pkinase 8.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03671 - - gmx:100783086 870.537