Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03661 ATGGCCGTGGAACTCATGACAGGTTACAACAACAACAGAACCGAAACTTTCACAACCAAAGCTGAAGAAAATGCTGTCCAAGAAGCAGCATCTGGTTTAGAAAGCGTTGAAAAACTCATCAAATTACTCTCACAAGCACGCCATCATCAATACCAACCTTCAAATCCCAACAACAACAACAACAACAACAACAACCCTTCCATGGAAATTGAAAGAGATTGCAACGCTGTTGCAGACATAGCTGTTTCCAAGTTCAAACGTGTTATCTCACTTCTTGAAAAAACCAGAACCGGTCATGCTCGTTTCAGAAAAGCACCTTTACCACAAACTCAACAGATTCAAATTTCTGAAACACCAATCTTCAACGCTACACCTTTACAACAAATTCCACCATCATCATCAACAACAACAAATCTTCACCGTTCTATAATTCAGAGAAAAGATTCATCAAAAACCCTTAATTTTTCATACTCTTCTGCTGCTAATTCTTTCATTTCATCACTCACCGCCGGCGGCGGCGACACCGACAACAAACAACCTTCATCATCATCACCGGCTGGAGCTTTTCAAATAACAAATCTTTCTCATGTTTCATCTGTTGGTAAGCCACCACTTTCATCTTCTTCATTGAAAAGAAAGTGTAGCTCTGAAACTTTGGGTTCTGGAAAGTGTGGTAGTTCATCTAGCCGTTGTCATTGTTCCAAAAAGAGTAGGAAAATGAGATTGAAAAGGGTTGTTAGGGTTCCTGCAATTAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGACAAAAACCTATTAAAGGTTCACCTCATCCAAGGGGATACTACAAGTGCAGTAGTGTGAGAGGGTGTCCAGCAAGAAAACATGTAGAGAGAGCTCTTGATGATGCATCTATGTTGGTAGTTACTTATGAAGGAGAACACAATCACTCTCTTTCTGCAGCTGATGCTACTAATCTCATTTTAGAATCATCATAA 999 0.3974 MAVELMTGYNNNRTETFTTKAEENAVQEAASGLESVEKLIKLLSQARHHQYQPSNPNNNNNNNNNPSMEIERDCNAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQTQQIQISETPIFNATPLQQIPPSSSTTTNLHRSIIQRKDSSKTLNFSYSSAANSFISSLTAGGGDTDNKQPSSSSPAGAFQITNLSHVSSVGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADATNLILESS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03661 332 MobiDBLite consensus disorder prediction 199 232 - -
Trre16g03661 332 MobiDBLite consensus disorder prediction 46 69 - -
Trre16g03661 332 SUPERFAMILY WRKY DNA-binding domain 256 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03661 332 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 26 325 IPR044810 GO:0003700
Trre16g03661 332 FunFam WRKY transcription factor 65 243 320 - -
Trre16g03661 332 Gene3D WRKY domain 246 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03661 332 SMART WRKY_cls 259 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03661 332 ProSiteProfiles WRKY domain profile. 254 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03661 332 MobiDBLite consensus disorder prediction 199 231 - -
Trre16g03661 332 MobiDBLite consensus disorder prediction 47 69 - -
Trre16g03661 332 Pfam WRKY DNA -binding domain 261 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03661 332 Pfam Plant zinc cluster domain 211 257 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03661 Trre-Chr16 40880923 40882639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03661 22 317 WRKY Transcription Factor Family AT2G24570 43.034 4.32e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g03661 WRKY 9.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03661 - - gmx:100170685 410.609