Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03660 ATGGCCGTGGAACTCATGACAGGTTACAACAACAACAGAACCGAAACTTTCACAACCAAAGCTGAAGAAAATGCTGTCCAAGAAGCAGCATCTGGTTTAGAAAGCGTTGAAAAACTCATCAAATTACTCTCACAAGCACGCCATCATCAATACCAACCTTCAAATCCCAACAACAACAACAACAACAACAACAACCCTTCCATGGAAATTGAAAGAGATTGCAACGCTGTTGCAGACATAGCTGTTTCCAAGTTCAAACGTGTTATCTCACTTCTTGAAAAAACCAGAACCGGTCATGCTCGTTTCAGAAAAGCACCTTTACCACAAACTCAACAGATTCAAATTTCTGAAACACCAATCTTCAACGCTACACCTTTACAACAAATTCCACCATCATCATCAACAACAACAAATCTTCACCGTTCTATAATTCAGAGAAAAGATTCATCAAAAACCCTTAATTTTTCATACTCTTCTGCTGCTAATTCTTTCATTTCATCACTCACCGCCGGCGGCGGCGACACCGACAACAAACAACCTTCATCATCATCACCGGCTGGAGCTTTTCAAATAACAAATCTTTCTCATGTTTCATCTGTTGGTAAGCCACCACTTTCATCTTCTTCATTGAAAAGAAAGTGTAGCTCTGAAACTTTGGGTTCTGGAAAGTGTGGTAGTTCATCTAGCCGTTGTCATTGTTCCAAAAAGAGGAAAATGAGATTGAAAAGGGTTGTTAGGGTTCCTGCAATTAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGACAAAAACCTATTAAAGGTTCACCTCATCCAAGGGGATACTACAAGTGCAGTAGTGTGAGAGGGTGTCCAGCAAGAAAACATGTAGAGAGAGCTCTTGATGATGCATCTATGTTGGTAGTTACTTATGAAGGAGAACACAATCACTCTCTTTCTGCAGCTGATGCTACTAATCTCATTTTAGAATCATCATAA 996 0.3976 MAVELMTGYNNNRTETFTTKAEENAVQEAASGLESVEKLIKLLSQARHHQYQPSNPNNNNNNNNNPSMEIERDCNAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQTQQIQISETPIFNATPLQQIPPSSSTTTNLHRSIIQRKDSSKTLNFSYSSAANSFISSLTAGGGDTDNKQPSSSSPAGAFQITNLSHVSSVGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADATNLILESS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03660 331 MobiDBLite consensus disorder prediction 46 69 - -
Trre16g03660 331 FunFam WRKY transcription factor 65 242 319 - -
Trre16g03660 331 SUPERFAMILY WRKY DNA-binding domain 255 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03660 331 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03660 331 Pfam Plant zinc cluster domain 211 256 IPR018872 -
Trre16g03660 331 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03660 331 Gene3D WRKY domain 246 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03660 331 MobiDBLite consensus disorder prediction 199 229 - -
Trre16g03660 331 MobiDBLite consensus disorder prediction 47 69 - -
Trre16g03660 331 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 26 324 IPR044810 GO:0003700
Trre16g03660 331 Pfam WRKY DNA -binding domain 260 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03660 331 MobiDBLite consensus disorder prediction 199 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03660 Trre-Chr16 40880923 40882639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03660 22 316 WRKY Transcription Factor Family AT2G24570 42.547 2.10e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g03660 WRKY 9.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03660 - - gmx:100170685 400.208