Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03653 ATGTCTCAAACCAAACATCATCAACAACAATCTCCTTCTTTTCTCGATGCTCTTCTCTGCCAAGAGCAAAACACATTCGAAGAAGATGATTCCGATGCAAACGTTACTGATTCTGAAACATGTGTCGAAAACCCATCAACAAAGTTACAATCTTTACCTATTATTTTACTTGAAAATGATCTTTTTTGGGAACACGATGAACTTGTTTCGTTAATTTTTAAAGAAAAAGAAACCCATTTGTTTTCTTTTAATGATGTTATTGTTGATGGATCTTTGGAAGATTCTCGTCTTGAAGCTGTTAACTGGGTTTCTAAAGTTTGTTCTCATTATGGGTTTTCTACTTTGACTACTGTTCTTGCTGTTAACTACTTTGATAGATTTGTTACTAGTTTGTTGTTTCAAAAAGATAAACCATGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAAGAAACCCATGTGCCACTTCTTTTAGACCTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAGACTATACAAAGAATGGAGCTTTTGGTGTTGTCTACTTTGAAATGGAGGATGCATCCAGTGACACCAATTTCTTTCTTTGAACACATTGTTAGAAGACTTGGTTTGAAGAGCCGTTTGCATTGGGAGTTTATGTGGCGTTGTGAGAGGGTTCTTCTTCATGTCATTGTTGATTCAAGGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATTCAACTGAGTACATTGATCAACTTATGAGTTTACTAAAGATTAGTGAGGAACAAGTGAATGAGTGCTACAAACTTATGCTGAAGCTATTAGTTTGCAATGATGGTATTTATAGTCTTCACCAGAAACGTAAGCGTGTATCTGAACCAAGTAGCCCGGGCGGTGTGATAGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACTGTGGCATCTTCAGTTTCACTTTCACTTCAGCCGATGTTTAAGAGGAGCAGAGCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAATCGTGTGTCTATTGATGTTCTTAATAGCCCTCGTTAA 1122 0.3717 MSQTKHHQQQSPSFLDALLCQEQNTFEEDDSDANVTDSETCVENPSTKLQSLPIILLENDLFWEHDELVSLIFKEKETHLFSFNDVIVDGSLEDSRLEAVNWVSKVCSHYGFSTLTTVLAVNYFDRFVTSLLFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCERVLLHVIVDSRVMMSYLPSTLAAATMIHVIKEIEPFNSTEYIDQLMSLLKISEEQVNECYKLMLKLLVCNDGIYSLHQKRKRVSEPSSPGGVIDASFSCDSSNDSWTVASSVSLSLQPMFKRSRAQDQQMRLPSVNRVSIDVLNSPR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03653 373 SMART Cyclin_C_2 198 327 IPR004367 -
Trre16g03653 373 Gene3D - 197 287 - -
Trre16g03653 373 CDD CYCLIN_AtCycD-like_rpt2 198 289 - -
Trre16g03653 373 Pfam Cyclin, N-terminal domain 77 195 IPR006671 -
Trre16g03653 373 SMART cyclin_7 101 189 IPR013763 -
Trre16g03653 373 CDD CYCLIN_AtCycD-like_rpt1 96 193 - -
Trre16g03653 373 FunFam D3-type cyclin 89 196 - -
Trre16g03653 373 PANTHER CYCLINS 40 294 IPR039361 -
Trre16g03653 373 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Trre16g03653 373 FunFam CYCLIN D32 197 287 - -
Trre16g03653 373 SUPERFAMILY Cyclin-like 199 301 IPR036915 -
Trre16g03653 373 SUPERFAMILY Cyclin-like 63 196 IPR036915 -
Trre16g03653 373 Gene3D - 94 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03653 Trre-Chr16 40739327 40740836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03653 15 363 Core Cell Cycle Gene Families AT5G67260 52.101 2.99e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03653 K14505 - gmx:100785030 571.622