Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03652 ATGAACAACTTCACCACCACAACCCTTTCTCTTCTTCTTACACTCCTAACACTAATCCTTAACCAATGTTTTTCACTCTCTAACGACGGCGTTTTGTTACTTTCTTTCAAATACGCTGTTCTAAACGACCCTTTATCAGTCCTTTCAAATTGGAACTATAGCGACCTAACACCATGTTCATGGAACGGTGTTTCTTGTTCCAACATTGTAACAATAACAAACACAAAAAACGATACACCATTTCGTGTTACTGCTTTATCACTACCAAATTCTCAGCTTACATGTTCTATTCCTTCTGATCTTGGTTCCATTGAACATCTTCAAATTCTTGATCTTTCTAACAATTCCATTAATGGGTCTCTTCCATCTTCCTTTTTTCAACCAAATTCCAACCTTCGTTTTATTAATTTTTCAAACAATTTGATAACAGGGGAAGTTCCAGAATCTTTAACAGAGCTTAAAAGTCTTCAATTTCTTAACTTTTCCGACAATGCTCTCACTGGAAAACTACCCAACAATCTCTCAAACATGCAAAACTTAACCGTTGCTTCGTTTAAGAACAATTACCTCACTGGTTTTCTTCCGAAAGATTTACAAACTTTACAGATTTTGGATCTGTCTTCAAATTTGTTGAATGGAACTTTAAGTCCAGATTTTGGTGGTGACAACATTCGTTACTTGAATGTTTCTTACAACAGATTTTCCGGTGAAATTCCACCGGAGTTTGCGGAGAAAATTCCGAGCAACGCAACGATTGATCTCTCGTTTAATAACCTCACCGGAGAGATACCGGATTCCCCTGTTTTGTTGAAGCAGGAAACAAAATCTTTCTCTGGTAACAGTGATCTATGTGGAGAACCAATGAAAAATCCATGTTCTATTCCTTCTTCTCCATCTTCTGAACCTAAAGATTCATCTCCACCTGCAATCGCGGCAATGCCGAAGAGTTTCGCCGATTCTCCTCTTTCACAACCAGCAGAGTCGAAAAAACAGAGCGGTTTAAGAAAAGGAACGATAATAGGAATCGTGATTGGAGATTTCGTTGGAATTGGAATCTTAGCTATGGTTTTTGTTTACGTTTACAAGTTAAAGAGAAAAAAAGATGAAGAAAATGCAACAAAAAACGAAGCTAATACTACAAGAAGTGAAAGTTCATCTTCAACTTTAGAAACAAAAGGTTTCACGAGGTGGTCGTGTTTAAGAAAAAGAACAGAAGATGAAGAATCCTCGGAGACACCGAGTTCTTCAGACAGTGACGTGGAAGCAGCACCGCGAAATGCGGAAGGTGTTGAAAATCAAAAGCAAGGAGAAAACAAAACCGGGTCGGGTTCTAGTTCGGGTACTCTTGTTACTGTTGATGGTGAAAGAGAACTTGAAGTTGAAACGCTTTTGAAAGCTTCTGCTTATATTTTAGGTGCTACTGGTTCAAGTATAATGTATAAAGCTGTTCTTGAAGATGGAACTTCTTTGGCTGTTCGTAGAATTGGTGAAAGTGGTGTTGAACGGTTCAAGGATTTTGAGAATCAGGTTCGGGTTATAGCGAAACTGGTTCATCCAAATTTGGTTCGGGTTCGTGGGTTTTATTGGGGTCATGATGAAAAACTCATTATCTATGACTTTGTTCCAAATGGTTGTCTTGCCAATGTTCGTTACAGGAAAGTGGGGTCTTCACCTAGCCACATACCGTGGGAAGTACGGCTCAAGATAGCAAAAGGAGTAGCACGTGGGCTTACTTATCTCCACGAGAAGAAGCACGTGCATGGAAATTTGAAGCCCACCAATATTCTATTGGGCAATGACATGGAGCCCAAAATTGGAGACTTTGGGCTTGAGAGAATAGTAACGGGTGACACAAGTTATAATAAAGCGGGTGGGTCAGCCCGTATATTTGGTAGCAAGAGATCAACAACCTCACGCGATAGTTTTCAAGATGTTTCATTTGGGCCTAGCCCAAGCCCGAGTCCAAGTTCTATTGGTGGTGTGTCTCCTTATCATGCTCCTGAATCGCTTAGGAATTTAAAGCCTCATCCAAAGTGGGATGTGTATTCTTTTGGGATCATGTTTCTTGAGCTTTTAACAGGAAAGATTGTGGTTTTGGATGATTTGGGACAAGGGCCCGCGGTTATGGTTGAGGATAAGAATCGCGCTTTGAGGATGGTTGATGTGGCAATCCGTGCTGACATGGAAGGCAAAGAAGAGGCTTTATTGGCTTATTTTAAGTTAGGGTATAGTTGTGTGACTAATGTTCCTCAAAAAAGGCCACAAATGAAAGAAGTGTTACAAGTACTTGAAAAAATACCATCTACATTGTCGTATTATTATAGTCACTGA 2331 0.3977 MNNFTTTTLSLLLTLLTLILNQCFSLSNDGVLLLSFKYAVLNDPLSVLSNWNYSDLTPCSWNGVSCSNIVTITNTKNDTPFRVTALSLPNSQLTCSIPSDLGSIEHLQILDLSNNSINGSLPSSFFQPNSNLRFINFSNNLITGEVPESLTELKSLQFLNFSDNALTGKLPNNLSNMQNLTVASFKNNYLTGFLPKDLQTLQILDLSSNLLNGTLSPDFGGDNIRYLNVSYNRFSGEIPPEFAEKIPSNATIDLSFNNLTGEIPDSPVLLKQETKSFSGNSDLCGEPMKNPCSIPSSPSSEPKDSSPPAIAAMPKSFADSPLSQPAESKKQSGLRKGTIIGIVIGDFVGIGILAMVFVYVYKLKRKKDEENATKNEANTTRSESSSSTLETKGFTRWSCLRKRTEDEESSETPSSSDSDVEAAPRNAEGVENQKQGENKTGSGSSSGTLVTVDGERELEVETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGESGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHDEKLIIYDFVPNGCLANVRYRKVGSSPSHIPWEVRLKIAKGVARGLTYLHEKKHVHGNLKPTNILLGNDMEPKIGDFGLERIVTGDTSYNKAGGSARIFGSKRSTTSRDSFQDVSFGPSPSPSPSSIGGVSPYHAPESLRNLKPHPKWDVYSFGIMFLELLTGKIVVLDDLGQGPAVMVEDKNRALRMVDVAIRADMEGKEEALLAYFKLGYSCVTNVPQKRPQMKEVLQVLEKIPSTLSYYYSH 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03652 776 Gene3D Phosphorylase Kinase; domain 1 433 540 - -
Trre16g03652 776 SUPERFAMILY Protein kinase-like (PK-like) 470 769 IPR011009 -
Trre16g03652 776 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
Trre16g03652 776 MobiDBLite consensus disorder prediction 377 394 - -
Trre16g03652 776 Gene3D Ribonuclease Inhibitor 27 197 IPR032675 -
Trre16g03652 776 Gene3D Ribonuclease Inhibitor 198 294 IPR032675 -
Trre16g03652 776 Pfam Leucine rich repeat 106 166 IPR001611 GO:0005515
Trre16g03652 776 PRINTS Leucine-rich repeat signature 198 211 - -
Trre16g03652 776 PRINTS Leucine-rich repeat signature 107 120 - -
Trre16g03652 776 Gene3D Transferase(Phosphotransferase) domain 1 542 772 - -
Trre16g03652 776 MobiDBLite consensus disorder prediction 631 663 - -
Trre16g03652 776 Pfam Protein kinase domain 471 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03652 776 FunFam Leucine-rich repeat receptor-like protein kinase 200 294 - -
Trre16g03652 776 MobiDBLite consensus disorder prediction 280 334 - -
Trre16g03652 776 MobiDBLite consensus disorder prediction 369 451 - -
Trre16g03652 776 Coils Coil 363 383 - -
Trre16g03652 776 MobiDBLite consensus disorder prediction 631 659 - -
Trre16g03652 776 SUPERFAMILY L domain-like 28 288 - -
Trre16g03652 776 FunFam Nuclear pore complex protein NUP107 27 196 - -
Trre16g03652 776 MobiDBLite consensus disorder prediction 396 410 - -
Trre16g03652 776 PANTHER OS05G0588300 PROTEIN 186 767 - -
Trre16g03652 776 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Trre16g03652 776 MobiDBLite consensus disorder prediction 431 451 - -
Trre16g03652 776 ProSiteProfiles Protein kinase domain profile. 465 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03652 Trre-Chr16 40719792 40722792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03652 25 776 Receptor kinase-like Gene Family AT4G37250 56.795 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre16g03652 Pkinase 4.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03652 - - gmx:100784503 1107.43