Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03649 ATGGATGATAGTGATTGGGATCTTATGTCCATTGTACGCAGCTGCAAAGCTACCACCTTTACTAATCCTAATAACATATTTGAAATGTCCCCTCCACCTCAAACCCCAATTACCAACACCTCCACCACCAACATTATTCCTACTCAAAACACCACACCATCTTACTTTAGCGATTTAACAGTTATCCAAAATAATAACCAAGTCCCTGTTACCCCACTCAAACCAACAGATTTCATAGATCTAGAGAAATTGAGAATTAATTTCAATAACAACAACACTCTTCCCATCCAGACAACAATTATCCCCAACCCCACCACCTCTTCCCCCATATCTACCACCACTACTCCCATCACATCGGCAACCACCATCCCCACTTACATCCCAACTACTCCTTTTGATTGTGAGTACAATCATCCACCAGTTTCACAACAACCTCCGAGACAGCACAATCAACTACCAACTCTACTACCACCCCAAACCCCAATTACCATCACCACCAACAATAATATTATACCCCCTCATAACACCACACTATCTTGCTTGAACGATTTTATTGCTATACAAGAAAACACTATACCTATCCCTCCATTTGAACCAATCAACTTTATAGATCTAGACAAATTTAGATTCAATTTCAATCACAACAATACACTCCAAATCCCTGCAACATTTATCCCTAACTCCACCACCATCACGACCCCCACCATAATCACAAACCCCACCATTTATATCCCAACCATTGTTCCCACCTACACCACAACTGCTCATTTTGATTGTACGTACAACCATCCATCAGTTGCACAACAACCTTTGAGACTGGACAATGAACTACCCCAAAACCTAATTACCATCACTACCACCAATAACATTATACATCCTCAAAACACTACACCATCTTACTCGAGCGATTTTACTGTTATCCAAAATAATAACTTGGATCATATCCCCTCATTTAAACCAACTAATTTTATAGATCTAGAGAAGTTTAGTTTCAATTTCAATCACAACAATACTCTCCAAATCCCTACAACAATTATCCCCAACTCGACCACCATCATGACCCCCACCATAATCACAACCTCTACCACATCTATTCCAACAATCATTCCCACCACCACCACCTTTTCCCCCATCTCCACCACCACTATTCCCACCTTGTCGACTACCACCGTCCTCACCCAGATCCCAACTGCTCATTTTGACTGTGCATACAATCATCCATCAGTTCCACAACAACCCTCGGGACAACATAATCAACTGCCAAATCTACAACCTCGAACTAGTTCCACAACAATCATTCCTACCACCACCACCTTTTCCCCCATCTCAACCACCACTATTCCCACCTCGCCAACTACCACCAGCCTCACCCAGATCTCAACTGCTCATTTTGACCGTGCATACAATCATCCATCAGTTCCACAACAACCTTCGGGACAACATAATCAACTGCCAAATCTACAACCTCGAACTAGTTCTAGGGTTTTACCAAATACATATCCACAACAACCAAAATGCAGATCAAGAAAGAGAAAGAATTATAACCAAGTGACATTGGTGTGCCAAGTGAAGAAGGAGAATCTTTCAGAAGATCAGTGGGTATGGAGAAAATATGGACAAAAATCTATTAAAGGATCTCCACATCCAAGGAGCTACTACAAATGTAGCACTTCTAAAGATTGTTCGGCAAGAAAACTAGTAGAAAAAAGCAAGACTATAGAGAACACTTATGTTTTGACATATATTGGAGTACACAATCATGAAAAACCATTGGTTACTCGGAACTCTAGAAGGTGGAGCTACCTATCTTCTCAAAGCTCTCAAATGCGTGAGTGA 1836 0.4112 MDDSDWDLMSIVRSCKATTFTNPNNIFEMSPPPQTPITNTSTTNIIPTQNTTPSYFSDLTVIQNNNQVPVTPLKPTDFIDLEKLRINFNNNNTLPIQTTIIPNPTTSSPISTTTTPITSATTIPTYIPTTPFDCEYNHPPVSQQPPRQHNQLPTLLPPQTPITITTNNNIIPPHNTTLSCLNDFIAIQENTIPIPPFEPINFIDLDKFRFNFNHNNTLQIPATFIPNSTTITTPTIITNPTIYIPTIVPTYTTTAHFDCTYNHPSVAQQPLRLDNELPQNLITITTTNNIIHPQNTTPSYSSDFTVIQNNNLDHIPSFKPTNFIDLEKFSFNFNHNNTLQIPTTIIPNSTTIMTPTIITTSTTSIPTIIPTTTTFSPISTTTIPTLSTTTVLTQIPTAHFDCAYNHPSVPQQPSGQHNQLPNLQPRTSSTTIIPTTTTFSPISTTTIPTSPTTTSLTQISTAHFDRAYNHPSVPQQPSGQHNQLPNLQPRTSSRVLPNTYPQQPKCRSRKRKNYNQVTLVCQVKKENLSEDQWVWRKYGQKSIKGSPHPRSYYKCSTSKDCSARKLVEKSKTIENTYVLTYIGVHNHEKPLVTRNSRRWSYLSSQSSQMRE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03649 611 SUPERFAMILY WRKY DNA-binding domain 524 590 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03649 611 SMART WRKY_cls 529 589 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03649 611 MobiDBLite consensus disorder prediction 468 511 - -
Trre16g03649 611 MobiDBLite consensus disorder prediction 468 504 - -
Trre16g03649 611 Gene3D WRKY domain 514 591 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03649 611 ProSiteProfiles WRKY domain profile. 524 590 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03649 611 MobiDBLite consensus disorder prediction 408 454 - -
Trre16g03649 611 Pfam WRKY DNA -binding domain 530 588 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03649 611 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 603 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03649 Trre-Chr16 40685101 40688436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03649 507 590 WRKY Transcription Factor Family AT5G52830 59.524 6.00e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g03649 WRKY 1.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03649 - - psat:127103159 203.371