Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03647 ATGGATCAATATTATTGCAAGGCATACCCTCGTATGTTTTCCAATGATTTTATCACACAAGATTTTTCATCTGAAAAATATTTCAATATCCAATTTGAATACAGAGTTATTGTTCCAACTCATACAAAGTTTCAATCTTTTAGATACAACATTCAACATCACACTCTTAATAATGTTTCAATGGATAAAATTGGGCAACAAGATACCTTTCTCTCATGGTTTTCTCAAATCAATGTTCCTGAAGATGCTTTTATATTGTTGACTGAAGAAATTTTGGAATGTGTTTATGATGACAAATATAAGAATCTAATGTTTCTTACTATTCAAGTTGAGTTTGTGGTTACAAGGGCTACTGAAGATGAAGATAACCCTAGTTTTGAAGAGGATGAAGAGGTAGTACTAGTAGAGATTGAAGAAGAAGAAGATAATGGGTTGGTTCATGATGATGTTGCTAGGGTTATTGAAGGTGAAACTGATGAAGATGATTTTGAAGTTGATTATGGTTTGGAAGAAGAAATGATGGCTGAAGAAGAATATAACTGGTTTACTCCTGCGGCTAAGTTGTGTGTTGAAGAATTGGATACCGTAAACGTTGAAGAAGCCACACAATGTACTATTTGCTTTGATGATTTTAATGTTGGTGTTCGATTGCCATGTTCACACATGTTTCATGCGAATTGTATTGAAGATTGGTTGACGATAGGATGCTCGTGTCCTTTGTGTAGGTTTCAATTGCCTACTAGCAACACAAGTGAATAA 759 0.3399 MDQYYCKAYPRMFSNDFITQDFSSEKYFNIQFEYRVIVPTHTKFQSFRYNIQHHTLNNVSMDKIGQQDTFLSWFSQINVPEDAFILLTEEILECVYDDKYKNLMFLTIQVEFVVTRATEDEDNPSFEEDEEVVLVEIEEEEDNGLVHDDVARVIEGETDEDDFEVDYGLEEEMMAEEEYNWFTPAAKLCVEELDTVNVEEATQCTICFDDFNVGVRLPCSHMFHANCIEDWLTIGCSCPLCRFQLPTSNTSE 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03647 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 251 IPR013083 -
Trre16g03647 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 140 246 - -
Trre16g03647 252 SMART ring_2 204 241 IPR001841 -
Trre16g03647 252 SUPERFAMILY RING/U-box 203 247 - -
Trre16g03647 252 ProSiteProfiles Zinc finger RING-type profile. 204 242 IPR001841 -
Trre16g03647 252 Pfam Ring finger domain 203 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03647 Trre-Chr16 40660214 40660972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03647 183 247 C3H Transcription Factor Family AT3G14970 45.070 1.87e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03647 - - tpra:123916835 237.269