Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03645 ATGACTTGTGCAAGGAAGAGCAAGAGAGAAACGACGCGTGTTAAAATACAGCTCCGTGCTATTCCCGGCCGTTCTGGAAAATCGTGTCGACTCCGTTGGTGTAATCAACTTTCTCCTCAAGTTGAGCATCGGGCTTTTACTCCTGAAGAAGATAATTTAATTATCAGAGCCCATGCTCAGTTTGGTAATAAATGGGCCACAATAGCCCGATTACTCTCGGGCCGAACCGATAACGCTATAAAAAACCATTGGAATTCAACTCTGAAGCGTGTGGAGAGTTCTTCCGATCAGCATCGATCTGCGGCGATGGCGATAAGTGTGAATCCGATAACGGCTGTAACTGCTTCTGTGGCGGCGAAAGTGGGAGCGTTGAATTTGAGTGGGGAGTTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTGAGGAGTTACATGGAAGAGCGTAATGGAATGTGTTTTCAAGGTGTTGATAGGCTTAGGAATGTTTCTGCTAAGCCTATTGGGATTAACAGGGTTGATTCTTAA 528 0.4508 MTCARKSKRETTRVKIQLRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDNLIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRVESSSDQHRSAAMAISVNPITAVTASVAAKVGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINRVDS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03645 175 SMART sant 42 90 IPR001005 -
Trre16g03645 175 FunFam Transcription factor MYB44 45 91 - -
Trre16g03645 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Trre16g03645 175 Gene3D - 12 42 - -
Trre16g03645 175 CDD SANT 45 88 IPR001005 -
Trre16g03645 175 Gene3D - 44 106 - -
Trre16g03645 175 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Trre16g03645 175 PANTHER MYB PROTEIN-RELATED 19 101 - -
Trre16g03645 175 SUPERFAMILY Homeodomain-like 20 93 IPR009057 -
Trre16g03645 175 Pfam Myb-like DNA-binding domain 45 87 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03645 Trre-Chr16 40585946 40586824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03645 19 115 MYB Transcription Factor Family AT5G67300 64.762 3.65e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g03645 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03645 K09422 - gmx:100806145 153.295