Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03643 ATGGAAGCAATTTCATACTCAATCCCTTCTACCAAATTCCATTCACTTCATCATATCCACACCAAAACCACAAGAATTCAATCCTCCAATCTCACTTTTCGCCTTCGCCCTTCCCCAATTTCAATTAAACCTTTCTATTCTTCCAAATTCCTAATTCTCCATCACCATAAGCTTCTTTGCAACGCTCAATCCACAACCAATCACCACCACGACCATAATCACAATCACAACGATCATAACCACAACCATAATCACAATCATAATCACAATCACAATCATAATCATCATCATCATCATCATCATAATCATTCGCATGACATCGGTGAGGCTAATCTCACTGGACCTCAAAGAGCGATTATCAGTTTCGCTAAAGCTACCAAATGGATTGACCTAGCGAATATCCTAAGAGAGCATTTGTATCTTTGTTGCTTCTCAACTGCTTTATTTGTTTCCGCTGCTATTTGTCCTCATGTTTTGCCCAAATCACTCATCAAACCCTTCCAAAATTCTTTCATTCTCGTCGCTTTTCCTTTGGTTGGGATTTCGGCATCACTTGATGCTTTAATTGAGATGAGTAGTGGTAAAGTGAATATCCATGTATTAATGGCAATGGCAGCTTTTGCATCGATATTTATGGGAAATTCTTTGGAAGGAGGGTTACTTCTTGCAATGTTTAATCTTGCACATATAGCTGAAGAGTATTTCACTGGCCGTTCAATGGTTGATGTTAAAGAGTTGAAGGAGAACAATCCCGAGTTTGCACTTGTTCTTGATACAAAAGATGATAAACTTCCTAATACATTTGATTTGGCATACAAGAGGGTTCCTGTGCACGATATAATTGTAGGATCATATGTCCTTGTTGGTGCCGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCGGTGCCACCATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCTAAAGTTGGAGATAGAGTTCCTGGCGGGGCAAGGAACTTAGATGGGAGAATAATTGTGAAGGTAACAAAGACATGGAAGGAATCAACACTAAGCAAAATTGTGCAGTTGACTGAAGAAGCTCAGTTGAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAAAATTACAGCAAAGTTGTAGTGGTGTTATCAATTGCTATTGCTGTTCTTGGACCACTTGTATTTAAGTGGCCATTCATTAGTACACCAGCTTGCAGAGGTTCTATTTACAGAGCTTTAGGGCTCATGGTTGCAGCATCACCATGTGCGTTGGCCGTGGCTCCATTGGCATATGCCACAGCAATCAGCTCCTGTGCGAAAAAGGGCATACTACTTAAAGGTGGACATGTTCTGGATGCGCTAGCTTCATGCCATACCATTGCATTTGATAAAACAGGGACATTGACTACTGGTGGACTTTTATTCAAGGCAATTGAGCCCATTTATGGTCATGACATCAGAAATAGGGAATCATTCATTTCTTCCTGCTGCATTCCTACATGTGAAAAGGAAGCTCTTGCCGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCCATTGGAAGGGCTGTGGTTGACCATAGTGAAGGGAAAGACCTCCCTTCTGTTTCTGTTGAAAATTTTGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGGAGGTGCTAAACTATTGAAAGCATCACTTGGGTCTATAGATTTCATCACTTCATTTTGTCAATCTGAAAATGAATCAAAAAAGATCAAGGAAGCTATTAATGCATCTTCATATGGAAGTGAATTTGTTCATGCTGCCCTTTCAATAAATAAAAAGGTAACACTGATTCATCTGGAGGATAGGCCGCGACCAGGGGTTTTTGATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGCGTGATGATGTTAACTGGTGATCATGAATATAGTGCAAAGAGAGTAGCAACTGCTGTGGGCATCAATGAGTTTTATTGCAACCTGAAGCCTGAAGATAAGCTGAGCCATGTGAAGGATATCTCAAGAGATATGGGGGGAGGATTAATTATGGTCGGGGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTCACCGTGCTAGTGCAACTGCTATAGCTGTTGCAGATGTGCTGTTGCTTCGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAATCTCGCCAGACAACTTCACTGATTAAGCAAAACGTGGCTCTGGCATTGTCTAGCATCTTTGTGGCTTCCCTTCCGTCAGTTTTGGGATTTCTGCCATTGTGGATAACGGTTCTCTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCCATACGTGCTTTAAATGAACCATCCTGGTCCTGGAAGCATGATATATTACAGTTGATTTCCAAGGCTAAATCTAGACTTCCCTCTCTTAGGACAAATATAACAGGTTCAAGCAGCATTACAACTGCGAATTTGTGA 2517 0.4148 MEAISYSIPSTKFHSLHHIHTKTTRIQSSNLTFRLRPSPISIKPFYSSKFLILHHHKLLCNAQSTTNHHHDHNHNHNDHNHNHNHNHNHNHNHNHHHHHHHNHSHDIGEANLTGPQRAIISFAKATKWIDLANILREHLYLCCFSTALFVSAAICPHVLPKSLIKPFQNSFILVAFPLVGISASLDALIEMSSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTGRSMVDVKELKENNPEFALVLDTKDDKLPNTFDLAYKRVPVHDIIVGSYVLVGAGESVPVDCEVFQGGATITIEHLTGEVKPLEAKVGDRVPGGARNLDGRIIVKVTKTWKESTLSKIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSIAIAVLGPLVFKWPFISTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLLFKAIEPIYGHDIRNRESFISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVENFEYFPGRGLTATVNSIESGTGGAKLLKASLGSIDFITSFCQSENESKKIKEAINASSYGSEFVHAALSINKKVTLIHLEDRPRPGVFDVIQELQDEAKFRVMMLTGDHEYSAKRVATAVGINEFYCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFVASLPSVLGFLPLWITVLLHEGGTLLVCLNSIRALNEPSWSWKHDILQLISKAKSRLPSLRTNITGSSSITTANL 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03643 838 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
Trre16g03643 838 MobiDBLite consensus disorder prediction 74 103 - -
Trre16g03643 838 Gene3D - 457 745 IPR023214 -
Trre16g03643 838 Pfam haloacid dehalogenase-like hydrolase 462 707 - -
Trre16g03643 838 NCBIfam heavy metal translocating P-type ATPase 198 796 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre16g03643 838 MobiDBLite consensus disorder prediction 65 110 - -
Trre16g03643 838 Gene3D - 238 362 - -
Trre16g03643 838 SUPERFAMILY Calcium ATPase, transmembrane domain M 200 780 IPR023298 -
Trre16g03643 838 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 27 836 - -
Trre16g03643 838 Gene3D - 475 625 IPR023299 GO:0000166
Trre16g03643 838 PRINTS P-type cation-transporting ATPase superfamily signature 718 730 - -
Trre16g03643 838 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Trre16g03643 838 PRINTS P-type cation-transporting ATPase superfamily signature 640 650 - -
Trre16g03643 838 PRINTS P-type cation-transporting ATPase superfamily signature 617 628 - -
Trre16g03643 838 PRINTS P-type cation-transporting ATPase superfamily signature 694 713 - -
Trre16g03643 838 NCBIfam HAD-IC family P-type ATPase 595 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g03643 838 NCBIfam HAD-IC family P-type ATPase 271 485 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g03643 838 Pfam E1-E2 ATPase 272 444 - -
Trre16g03643 838 CDD P-type_ATPase_HM 148 796 - -
Trre16g03643 838 SFLD C1.7: P-type atpase like 446 747 - -
Trre16g03643 838 SFLD p-type atpase 446 747 IPR044492 -
Trre16g03643 838 SUPERFAMILY Calcium ATPase, transduction domain A 272 357 IPR008250 -
Trre16g03643 838 SUPERFAMILY HAD-like 462 794 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03643 Trre-Chr16 40574461 40583807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03643 115 822 Primary Pumps ATPases AT4G37270 76.412 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03643 K01534 - gmx:100776309 1334.7