Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03633 ATGGTTGCTGCTGGGGTATGGTCTGATGATAACACCAAACAATTGGAAGGAACTATTCATTATCGGAAGCTTGTTTCGGTTAATGCAAACCCTCAAATTGATGAAGTTATTCAATCTGGTGTTGTTCCTCGTTTGGTTGAATTTCTAGCTAGGGATGATTTCCCTCAACTTCAGGTTCAGGCTGGTTGGATACTCACAAACATAGCAGGTGGAACTTCTGAGAACACTAAGGTGGTAATTGATCATGGTGCAGTGCCGATACTTGTCAAGCTACTTAGTTCACCTGATGATGATGTTCGAGAACAGGCTATATGGGCATTGGGTAATGTTGCCGGTGATTCCCCTAGGTGCCGTGATCTTGTTCTCAGTTATGGTGCCCTGATCCCGTTGTTGTTCCAGTTCAATGAGCGAGCAGAGTCTTCTATGCTGGGAGTTGCCACGTGGGCCCTGTCAAACTTTTGCAGGGGCAAGCCACAACCCCCATTTGAGCAGGTGAGGCCAGCGCTTCCCGCTCTTGCCCGTTTGGTTTTTTCCAACGATATAGAACTTATAGGAGATGCATGTTGGGCACTCTCATATCTTTCTGATGGAACAAAGGACAACATCCAAGCAGTGATTGAGGCCGGTGTATGTGGCAGACTGGTGGAACTCCTTCGGAACCCATCTCCTTCAGTGGTGTTTCCTGCACTTCGCACGGTGGGATTAATTACAACTGGAGACGACATGCAGACTCAGGTTGTTATCAATCATCGTTCACTCCCATGCCTTTTGAGGCTGTTGACCGGTAATCATAGGAACGATATTAAGAAATATGCTTGTTGGACTATATCAAACATTGTAGCTACAAATAGAGAGAAGATCCAGGTTATTATTGACGCTGGTCTGATTGCTCCCATGGTCAATCTTTATCAAAATGCCGAATTTGACCTTAAAAATGAAATTGTATGGGCACTCTATAATGCTACATGTGGTGCTACCAATGAGCAAATAAAGTACTTGGTGAGCCTGGATTACATTAAGCCTCTGTGTGATTTTCTTGTTTGCCCTGATCCAATAATTGTTGCTGCCTGTTTAAAAGGTCTTGAGAATTTTCTAAAGGTTGGAGAAGCGGAGAAAAGCTTTGGTAACACCAAATATGTCAACTTGTATGCTCAAATGATAGATGATGCAGGGGGACTGGAAAAGATTAAAAACTTGCAGAGTCATGACAACAGTAAAATTCATGAGAAGGCTGTTAAAATTCTCAAAAGCTTTGAAAGCAGTAACCTTCCGGTCCCATCTGCTGGAGCAGGGTTGATCCTTTGGGGTCGAGTCCGGGTGGAATGGGGTGTCGTCCTTGTACTTCATGGTGTCTGGTGTCAGTCTGATAATGAAGTGCTCGGCTTACAAGCTGAACTTCATGCAATTTATAATGGTCTTCGTTTGACAATGGATCAAGGATTCAATAATGTTATTGAATCCAATTCCACAATTGCGATTTGTTTGGTGGTTAATGATACTTCTCCTTTTGACCATTATGCTCCTCTCATCAAGAAGATTTGA 1542 0.4339 MVAAGVWSDDNTKQLEGTIHYRKLVSVNANPQIDEVIQSGVVPRLVEFLARDDFPQLQVQAGWILTNIAGGTSENTKVVIDHGAVPILVKLLSSPDDDVREQAIWALGNVAGDSPRCRDLVLSYGALIPLLFQFNERAESSMLGVATWALSNFCRGKPQPPFEQVRPALPALARLVFSNDIELIGDACWALSYLSDGTKDNIQAVIEAGVCGRLVELLRNPSPSVVFPALRTVGLITTGDDMQTQVVINHRSLPCLLRLLTGNHRNDIKKYACWTISNIVATNREKIQVIIDAGLIAPMVNLYQNAEFDLKNEIVWALYNATCGATNEQIKYLVSLDYIKPLCDFLVCPDPIIVAACLKGLENFLKVGEAEKSFGNTKYVNLYAQMIDDAGGLEKIKNLQSHDNSKIHEKAVKILKSFESSNLPVPSAGAGLILWGRVRVEWGVVLVLHGVWCQSDNEVLGLQAELHAIYNGLRLTMDQGFNNVIESNSTIAICLVVNDTSPFDHYAPLIKKI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03633 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 251 294 IPR000225 GO:0005515
Trre16g03633 513 FunFam Importin subunit alpha 1 420 - -
Trre16g03633 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 40 83 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 198 238 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 29 70 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 283 323 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 240 281 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 157 196 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 72 112 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 326 366 IPR000225 GO:0005515
Trre16g03633 513 SMART arm_5 113 155 IPR000225 GO:0005515
Trre16g03633 513 PIRSF Importin_alpha 1 425 IPR024931 GO:0005737|GO:0006606|GO:0061608
Trre16g03633 513 SUPERFAMILY ARM repeat 5 416 IPR016024 -
Trre16g03633 513 PANTHER IMPORTIN ALPHA 4 419 - -
Trre16g03633 513 Pfam Armadillo/beta-catenin-like repeat 199 237 IPR000225 GO:0005515
Trre16g03633 513 Pfam Armadillo/beta-catenin-like repeat 168 195 IPR000225 GO:0005515
Trre16g03633 513 Pfam Armadillo/beta-catenin-like repeat 30 69 IPR000225 GO:0005515
Trre16g03633 513 Pfam Armadillo/beta-catenin-like repeat 72 111 IPR000225 GO:0005515
Trre16g03633 513 Pfam Armadillo/beta-catenin-like repeat 241 280 IPR000225 GO:0005515
Trre16g03633 513 Pfam Atypical Arm repeat 381 420 IPR032413 -
Trre16g03633 513 Gene3D - 1 418 IPR011989 -
Trre16g03633 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 83 125 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03633 Trre-Chr16 40514204 40518567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03633 55 305 U-box Gene Family AT3G46510 23.462 2.43e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03633 K15042 - gmx:100808498 640.958