Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03613 ATGATCTTCCTTAAGGAGAGCAAAGACAATGATAAAGCCTCAAGCAATAAACAAAACCTTGATGATGAACCACAAAACAATATTAACATAGGAGAATGGTTGAATTTAGGAACCAAACAAGACATGTCTATGAAAATAGCTCATCAAAACCAAAATGCTCAATCATCAAAACCTCTTCACAAAAAGACATACTCATGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTAGGGGGACACCAAAATGCACATAAAAGGGAAAGAGAAGCAGCTAGAAAATTCAAATTATCTCATAATTCTTTGGTGGCAAGGTCACTAGGAATCCAGCCTCACTCTCTTGTGCACAAACAAAGCAGAGAAAGAGCTGCTACTATGGTGGCTCAATTCAATGTTAATGATGCAAGTTCTAGAATTGGAATGGCATGGACACCCCTTCTTCTTGAACATGGTGTTGATTTTGTATGGCATGGAAGCTTTCGAATGGATTTGCCAAAGCAAGAATCAGATATACATAATAAGCTGGACTTAGATCTTAGGCTTTGA 549 0.377 MIFLKESKDNDKASSNKQNLDDEPQNNINIGEWLNLGTKQDMSMKIAHQNQNAQSSKPLHKKTYSCNFCMRKFYSSQALGGHQNAHKREREAARKFKLSHNSLVARSLGIQPHSLVHKQSRERAATMVAQFNVNDASSRIGMAWTPLLLEHGVDFVWHGSFRMDLPKQESDIHNKLDLDLRL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03613 182 PANTHER ZINC FINGER PROTEIN 4-LIKE 8 182 - -
Trre16g03613 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Trre16g03613 182 MobiDBLite consensus disorder prediction 1 18 - -
Trre16g03613 182 SUPERFAMILY beta-beta-alpha zinc fingers 60 91 IPR036236 -
Trre16g03613 182 MobiDBLite consensus disorder prediction 1 28 - -
Trre16g03613 182 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Trre16g03613 182 Gene3D Classic Zinc Finger 38 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03613 Trre-Chr16 40235412 40235960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03613 50 172 C2H2 Transcription Factor Family AT1G24625 36.765 1.87e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03613 - - gmx:100795890 201.445