Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03602 ATGTATCCAAACCCACAAGAACAATCACAACCACTATTAGTGGAACGCCAAGAAGATGAAGAGCTTCAAGAAACAGCTTATGATTCATCTGAAAAGATTGTTGTAGTTGGAATTGACGAATCAACAGACTGGGGTACCTCAGTTCCACCATTTTCATGGAAAAAGCTATGGAGATTCACAGGTCCTGGTTTTCTAATGAGCATAGCGTTTTTGGATCCAGGGAATTTAGAAGGAGACCTTCAAGCTGGTGCCATTGCTGGGTATTCTTTGTTATGGCTTCTTATGTGGGCTACAGCAATGGGGCTTTTGATTCAGCTTTTGGCAGCTAGACTTGGTGTTGCTACAGGGAAGCATTTGGCTGAGCTTTGTAGGGAGGAGTATCCTAGATGGGCTAGGAATGTGCTTTGGGTTATGGCTGAATTTGCTCTTATTGGTTCTGATATACAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTCTTAGTAATGGGGTTGTTCCTCTTTGGGGTGGTGTTATCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGATCATTGGAAGCTTTTTTTGCTGTTCTCATTGGCATAATGGCAGTAGCTTTTGGTTGGATGTTTAGTGAGGCAAAGCCAAGTGGCAAGGAACTTCTAGTTGGCATTCTTGTTCCAAAACTCAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGCTGTCTTATAATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGGCAAGTTGATCATAGCAACAAAGGCCGAGTTCAAGAAGCGCTTAATTATTTCTCAATAGAGTCTACGCTTGCCTTGATAGTCTCCTTTATTATCAACATATTTGTCACAGCTGTGTTTGCTAAAGGATTTTATGGTAAAGAAACGGCAAATAGTATTGGCCTAGTAAATGCGGGACAGTATCTTCAGGATACTTATGGAGGTGGAATGTTTCCGATACTGTACATATGGGGTATTGGATTGTTAGCAGCTGGTCAAAGTAGCACTATAACCGGTACTTATGCTGGACAATTTATCATGGGAGGTTTTCTAAATTTAAGGTTGAAGAAATGGATGAGGGCATTGATTACTCGAAGTTTTGCAATAGTCCCAACTATGATAGTTGCTCTTATATTTGATGCTACAGAGGATTCACTAGATGTTCTGAATGAGTGGCTTAATGTTCTTCAGTCGGTACAAATCCCCTTTGCACTTATTCCTTTGCTTTGTTTGGTATCAAAGGAACAGATAATGGGAACTTTCAAAATTGGCACTGTCCTCAAGATTATTTCTTGGTCTGTGGCTGCTCTTGTGACAGTGATCAATGGCTATCTTTTGATGGAATTCTTCTCAGCTGAAGTGAATGGAATAATGGTTGGAGCTATAGTGTGTGTAGTAACTGCTGCATATGTTGCATTCATAATATATCTTATTTTGAGGGCTACTAGGAAGTAA 1497 0.4001 MYPNPQEQSQPLLVERQEDEELQETAYDSSEKIVVVGIDESTDWGTSVPPFSWKKLWRFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLAARLGVATGKHLAELCREEYPRWARNVLWVMAEFALIGSDIQEVIGSAIAIRILSNGVVPLWGGVIITALDCFIFLFLENYGVRSLEAFFAVLIGIMAVAFGWMFSEAKPSGKELLVGILVPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDHSNKGRVQEALNYFSIESTLALIVSFIINIFVTAVFAKGFYGKETANSIGLVNAGQYLQDTYGGGMFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIVPTMIVALIFDATEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGTVLKIISWSVAALVTVINGYLLMEFFSAEVNGIMVGAIVCVVTAAYVAFIIYLILRATRK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03602 498 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 PRINTS Natural resistance-associated macrophage protein signature 135 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 NCBIfam Nramp family divalent metal transporter 61 430 - -
Trre16g03602 498 Hamap Divalent metal cation transporter MntH [mntH]. 42 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 48 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre16g03602 498 Pfam Natural resistance-associated macrophage protein 77 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03602 Trre-Chr16 40184938 40187640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03602 5 494 Inorganic Solute Cotransporters AT2G23150 76.008 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03602 K21398 - gmx:100812381 837.41