Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03599 ATGGAGACTAGCTCTGTAGAGATGATTTTGATTGATGAGAAGAATGTGAAGGGTGTATACCAATGGAGGAAATATGGGCAAAAGGTGACAAAATATAACCCTTGTCCCAAAGAAAAGAAGATATCCCAGAGGCTGAAGCTTTTAAAAATCAAATTGTTGTCCATTGAGAGTGATAGCACCGTTCCATTGATTGTTGTTCCAAGTCCATTAAGTTTACCTATTCATGAACCTATTGAGGAGACTAAAAGGGATGTTGCAGTCAATCTTAAGAAGAACCTGACTAAAGTTTTTGATGGGGTTGCTGAGCGAAAATCAAGCAAACGTCTCACACCTGTCAAAATTGAGGAGTGA 351 0.3875 METSSVEMILIDEKNVKGVYQWRKYGQKVTKYNPCPKEKKISQRLKLLKIKLLSIESDSTVPLIVVPSPLSLPIHEPIEETKRDVAVNLKKNLTKVFDGVAERKSSKRLTPVKIEE 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03599 116 SUPERFAMILY WRKY DNA-binding domain 13 37 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03599 116 Gene3D WRKY domain 6 48 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03599 116 ProSiteProfiles WRKY domain profile. 11 37 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03599 Trre-Chr16 40164911 40166923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03599 16 37 WRKY Transcription Factor Family AT1G80840 72.727 9.75e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03599 - - zma:103638821 44.2838