Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03576 ATGCTCCCAACTCATTTCATCCCTGATTCAATCGCACGTTTCACATACACCGGTTCTATTGGTCGAGGCTTAACAACTTATAGTAACGATTTCCTCTCACGAGCTTTGGAAACCAAACTCCGTCTTAACCTCGGTGGCAATCCTGTCAATAGAGATACCGATATCTTATCAAGAAAATGGTTACCAGATGACAATTATATAACTGATCCACAAAACGCTCAGAATGGTACCTATTTTGATGGAGGTAGAATTCAACGCACGGCAAATGATTCATCTGATGGTCCAAATTCAAATCAATATGTTGCTCCAGATATTGTTTATCAAACTGCCAAAGAGAGCAAAAACGGTTCTAACGGTTTAAGCATAATTTGGAATGTTCCTGTTGAGAAGAATATTGATTATTTTCTTAGGCTTCACCTTTGTGACATTTTTAATACACAGATTGGTCTTACAACTTTCTTTCTCTACATCTATGACAGTTATGTTAAAAATATTAATGACGGCGTAGAATTGTCATCTGTGTTGAGTGATCCTTATTATTATGATTTTGTGGTTTGTTCTGATGGCTCTGGGAAATTGAAGGTTGCGGTAACCCCTAATGTGACCGATTTTAAACCGAACGCATTTTTAAATGGGCTAGAACTAATGAAAGTGATTGCATCATCGGGTTCAATTCCCTTAGATGATTTAGATTCCAATTCAAAGAAGATTAATCTTCCTGTGGTGGTGGGTTCGGTCGTTGGAGGTTTAGTATTGGTTTCTGTTGTGGTGGTTTTGTTTCTTTGGATTAGTAAAACCAGGAAACAAAAGCCTGTTGAGAATTCCGAATGGTTGAAGATTCCAACTACTGCAGGAGGGATTTCTAATAGCAGATTACCATATGGAAAAATAACTCCAGGCCAACCTTTACCTAACATAAACCTTGGCCTGAAAATCTCCTTGCTTGATCTTCAATTTGCAACAGAGAATTTTGATGTGAAGAGGATAATTGGAATTGGTGGTTTTGGAAATGTTTATAAGGGAGTCCTCAAGAATGGAATGAGTGTAGCGGTAAAAAGAAGTGCGTCGGGGTCAGGTCAAGGACTTCCAGAATTTCAAACCGAGATAATGGTTTTGTCCAAAATTCGTCACATAAATCTTGTTTCTATAATAGGGTATTGTGATGAAAGGGATGAGATGATACTTGTTTATGAGTACATGGAAAAAGGGACACTTAGAGAGAATTTGTACAATACGAATTTGCCTTATTTGACTTGGAAGCAAAGGCTTGAGATTTGTATTGGTGCTACTAGAGGACTTCATTACCTTCACAAAGGGGTAGCTGGCAGAATAATTCACCGTGATGTGAAATCCACCAACATTTTGCTTGATGAGAATCTTGTAGCTAAAGTTGCTGATTTTGGTCTTTCAAGGACAAGTTCTCTTGATCAACACTCTTATGTCAGCACATGTGTTAAAGGAACTTTTGGATATCTTGATCCCGATTACTTTAGAACACAACATCTTACAGAAAAATCTGATGTTTATTCGTTTGGGGTTGTTCTACTTGAAGTGTTGTGTGCAAGACCAGCCATTGATCTGTCTTGTCCAAATGAGCAAGTCAATTTGGCTGAGTGGGGATTGCTTTGCAAAGAGAAAGGAATACTCGAAGAGATCGTTGATCCTTCCATCACAAGACAAATTAATCAAAACTCACTTAGAATATTTAGCGAGACCGTGGAAAAATGCTTACAAGATTATGGTTGTGATAGGCCAACAATGGTTGATGTGTGGGACTTGGAATATGCTTTGCAACTTCAAATAGAACCACATGAGGATAGTTCTAGCAGTGCTTTTGGATCACTTCAATTGCCTAATGTTCAACATTTAGCTTCTATGTCTACACTGATTGAAGTGGATGGCATGTCTATTGGGAGGGTTGATGAATCTGAAACTACAACATCAATGATGCTAGATAGAATTTCATGTGAAGCAAATCAAGGCACAACAATCAACTCGCAAATGTCTCCATTGGATAGTTGTTTTTTTAGATAG 2034 0.38 MLPTHFIPDSIARFTYTGSIGRGLTTYSNDFLSRALETKLRLNLGGNPVNRDTDILSRKWLPDDNYITDPQNAQNGTYFDGGRIQRTANDSSDGPNSNQYVAPDIVYQTAKESKNGSNGLSIIWNVPVEKNIDYFLRLHLCDIFNTQIGLTTFFLYIYDSYVKNINDGVELSSVLSDPYYYDFVVCSDGSGKLKVAVTPNVTDFKPNAFLNGLELMKVIASSGSIPLDDLDSNSKKINLPVVVGSVVGGLVLVSVVVVLFLWISKTRKQKPVENSEWLKIPTTAGGISNSRLPYGKITPGQPLPNINLGLKISLLDLQFATENFDVKRIIGIGGFGNVYKGVLKNGMSVAVKRSASGSGQGLPEFQTEIMVLSKIRHINLVSIIGYCDERDEMILVYEYMEKGTLRENLYNTNLPYLTWKQRLEICIGATRGLHYLHKGVAGRIIHRDVKSTNILLDENLVAKVADFGLSRTSSLDQHSYVSTCVKGTFGYLDPDYFRTQHLTEKSDVYSFGVVLLEVLCARPAIDLSCPNEQVNLAEWGLLCKEKGILEEIVDPSITRQINQNSLRIFSETVEKCLQDYGCDRPTMVDVWDLEYALQLQIEPHEDSSSSAFGSLQLPNVQHLASMSTLIEVDGMSIGRVDESETTTSMMLDRISCEANQGTTINSQMSPLDSCFFR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03576 677 SMART serkin_6 324 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03576 677 CDD STKc_IRAK 330 590 - -
Trre16g03576 677 FunFam Receptor-like protein kinase FERONIA 400 613 - -
Trre16g03576 677 Gene3D Phosphorylase Kinase; domain 1 303 399 - -
Trre16g03576 677 Pfam Malectin-like domain 25 218 IPR024788 -
Trre16g03576 677 FunFam receptor-like protein kinase FERONIA 299 399 - -
Trre16g03576 677 SUPERFAMILY Protein kinase-like (PK-like) 312 606 IPR011009 -
Trre16g03576 677 Gene3D Transferase(Phosphotransferase) domain 1 400 610 - -
Trre16g03576 677 MobiDBLite consensus disorder prediction 72 97 - -
Trre16g03576 677 Pfam Protein tyrosine and serine/threonine kinase 326 524 IPR001245 GO:0004672|GO:0006468
Trre16g03576 677 PANTHER OS07G0166700 PROTEIN 311 600 IPR045272 GO:0004714|GO:0006468
Trre16g03576 677 ProSiteProfiles Protein kinase domain profile. 324 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03576 677 Gene3D - 35 219 - -
Trre16g03576 677 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Trre16g03576 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03576 Trre-Chr16 39929533 39931566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03576 34 628 Receptor kinase-like Gene Family AT2G23200 46.764 4.14e-170 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre16g03576 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03576 - - mtr:25493508 868.611