Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03566 ATGTATAACCACATGTATCTGCAAAACAACAAGTGTATAAAGTTAAATCAGCTAACAATAAATTCTGGAGGGGTTGCTTCCTTTGCCCTTTTCAATGTCCATGGGAGTGATGATGCATCTGTAAAAGAAGCAGCAGCTGTCATAAAGTTATCTTCATCGAGAATGGCAACACAGTCCGAATGTCTCGGATATGAATTTGCCAAGTGGTTGGGAGTCCAAACGCCACAGGCTAGAGTCATTCACAATACCAGTTCAGAATGGCTCCAAATAAAAGAAGCTGCAGAAAAAGCAAGGGATGCAGCAAGTTTTAAGCGTGATGCAATTGGTGAAACAACATGTTCAGAGCTTTTGGAAGCACTTGAGCTTAGTCGGTGTATCTTGTTTATGAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGTTATCAATCTTGGGAGATAAAATGAACATGTTTAGTAGGATGATAGAAGGGTTGATTTGGTCTCCACAAAGCAACAACGGTATTAGCCGAGCTGATGATTGGGCTTTTGAGGAGGAATTTGATAAGCAAGTTCCACTGATGGATGAGATTGATACAAAGGTGAGATTCATCAATTTCTTCCTGTAA 615 0.4081 MYNHMYLQNNKCIKLNQLTINSGGVASFALFNVHGSDDASVKEAAAVIKLSSSRMATQSECLGYEFAKWLGVQTPQARVIHNTSSEWLQIKEAAEKARDAASFKRDAIGETTCSELLEALELSRCILFMRMDEMMRGQRGWRELSILGDKMNMFSRMIEGLIWSPQSNNGISRADDWAFEEEFDKQVPLMDEIDTKVRFINFFL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03566 204 SUPERFAMILY Protein kinase-like (PK-like) 15 131 IPR011009 -
Trre16g03566 204 Pfam Actin-fragmin kinase, catalytic 6 149 IPR015275 -
Trre16g03566 204 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 14 130 IPR035010 GO:0004721|GO:0009737|GO:0043622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03566 Trre-Chr16 39418563 39420523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03566 17 129 Protein tyrosine phosphatase (PTP) family AT5G23720 69.027 2.05e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03566 K14165 - jre:109000311 181.03