Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre16g03561 | ATGACTAACATAACAAAGTGGAGAAGCCTTATAAAGCAGTTCTCATTTAAGTTAACAGATGCTGCTCGTGCTATTGATCCTAAGTATTTGAAGGAAGGGGAACAAGTTCTTGTGGGATTTGAAGGTCCTTTTGTTTCTCGCCGGGTCATGCCTAGCGATCTTCTTTCTGAATTTTTAGGTTCTATGGTCTGTGTTGAGGGCATTATCACCAAATGTTCTCTCGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACTGGCAACTTCACTAGCCGTGATTATCGAGATATTACATCTAATTTGGGTTTGCCCACAGGGTCTGTTTATCCCACAAGGGATGAAAATGGCAATTTACTTGTCACCGAGTATGGATTGTGCAAATACAAGGATCATCAAACCTTGTCCATGCAGGAAGTTCCTGAAAATTCTGCGCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGTGTCGCTATTGTTGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTGAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTATCTCTTCTCAACAAAGAGGCTAATGATCCAATCTACAGCCCTAAAGACCTTAAAAACATTAAACAATCAGAGCAGAGTGTTATATTATTCTATAAGGATTTTGTGGAATTTCTATATGAGCTTCTTGGAGGAACTGCGTCTATCACAGGCAAGTAA | 765 | 0.4144 | MTNITKWRSLIKQFSFKLTDAARAIDPKYLKEGEQVLVGFEGPFVSRRVMPSDLLSEFLGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGNFTSRDYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANDPIYSPKDLKNIKQSEQSVILFYKDFVEFLYELLGGTASITGK | 254 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre16g03561 | 254 | Gene3D | - | 78 | 132 | - | - | |
| Trre16g03561 | 254 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 124 | 138 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Trre16g03561 | 254 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 150 | 162 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Trre16g03561 | 254 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 35 | 228 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g03561 | 254 | Pfam | MCM OB domain | 53 | 182 | IPR033762 | - | |
| Trre16g03561 | 254 | Gene3D | - | 53 | 182 | IPR012340 | - | |
| Trre16g03561 | 254 | SMART | mcm | 47 | 252 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g03561 | 254 | SUPERFAMILY | Nucleic acid-binding proteins | 11 | 202 | IPR012340 | - | |
| Trre16g03561 | 254 | FunFam | DNA helicase | 78 | 132 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre16g03561 | Trre-Chr16 | 39375178 | 39377613 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre16g03561 | 11 | 224 | Core DNA Replication Machinery Family | AT5G46280 | 81.776 | 4.72e-129 | 375 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre16g03561 | K02541 | - | cave:132172742 | 391.349 |