Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03558 ATGACGCAATTCACACCTTCACTACCTTATTTGCACCAAACAACAACAACCTTTTCAAACCCTTCTTCTTCTTCCATGAACAAAAACAATCAAATACCAACTAAACCATGGTTCCCAACATCCAAAGCTTTAACTACTTTTGGTGACACAAACTGCATGGAACAGTTACTTGTTCATTGCGCAAACGCAATCGAAACAAACGATGTAACACTTGCTCAACAAATCCTTTGGGTTCTTAACAATATAGCACCACAAGACGGCGATTCAAATCAACGCTTAGCATATAGTTTCCTAAGAGCTCTCACAAATCGCGCAGCGAAAACCGGTACCTGCAAAATGCTAGTAGAACAAGTTTATTCAAATGCTCATAACAATCTTACCATAGAAACTCACAGATTCTCAGTCATTGAACTAGCTAACTTTGTCGATTTAACACCATGGCATCGATTCGGTTATGCAGCAGCTAATGCAGCCATTCTTGAAGCAACAGAAGGTTTTTCAGTGATTCATATTGTTGATTTAAGTTCAACTCATTGCATGCAGATTCCAACATTAATCGATGCTATCGCGAATCGCCATGAAGTTCCTCCTTTAATCAAACTCACAGTTTCTGATCATGATAATAACATTGATCAAATTCCACCTAAACTTGATCTTTCTTATCAAGAATTAGGTTCTAAGTTGGTTAATTTCGCTAGGTCGAGAAACGTGACATTAGAATTTAGAGTAGTTTCTTCGAGTTACACAAACGGTTTCGCTACTTTGATCGAACATTTAAGAGTTCAACGTATGGTTTATTCAGGTGAAGCATTGGTTATAAATTGCCACATGATGCTTCATTATATTCCAGATGAAACCCTATCAAATTCAAACTCTTATGTTTATGATTCCATGTCTTCTTCTGCTTCTACTACTACTGCTGCTACTACTACTACGTCTCTCAGATCATTGTTTCTTACCGCGCTTCGCGGTTTAGATCCAACACTTGTTATTTTAGTAGATGAAGATGTTGATTTAACTTCAAATAACTTGGTTAGTAGATTAAGGTCAGCATTTAACTATCTATGGATACCTTATGATACTGTGGACACTTTTCTGCCACGTGGAAGTAAACAAAGACAATGGTATGAATCAGATATTTGTTGGAAGATTGAAAATGTGATAGCTCATGAAGGAGTTCAAAGAGTTGAGAGAGTTGAACCTATTGGAAAATGGGAACAAAGAATGAGAAATGCAAATTTTCAAGGGATTGGATTTGGTGAGGAATGTGTTGGTGAAGTTAAGGTTATGCTTGATGAACATGCTGCTGGTTGGGGATTGAAGAAAGAAGATGAATGTATTGTGCTTACTTGGAAAGGGCATAATGTTGTTTTTGCTTCTGCTTGGTTACCTGCTTAA 1398 0.372 MTQFTPSLPYLHQTTTTFSNPSSSSMNKNNQIPTKPWFPTSKALTTFGDTNCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPQDGDSNQRLAYSFLRALTNRAAKTGTCKMLVEQVYSNAHNNLTIETHRFSVIELANFVDLTPWHRFGYAAANAAILEATEGFSVIHIVDLSSTHCMQIPTLIDAIANRHEVPPLIKLTVSDHDNNIDQIPPKLDLSYQELGSKLVNFARSRNVTLEFRVVSSSYTNGFATLIEHLRVQRMVYSGEALVINCHMMLHYIPDETLSNSNSYVYDSMSSSASTTTAATTTTSLRSLFLTALRGLDPTLVILVDEDVDLTSNNLVSRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYESDICWKIENVIAHEGVQRVERVEPIGKWEQRMRNANFQGIGFGEECVGEVKVMLDEHAAGWGLKKEDECIVLTWKGHNVVFASAWLPA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03558 465 ProSiteProfiles GRAS family profile. 44 463 IPR005202 -
Trre16g03558 465 MobiDBLite consensus disorder prediction 15 34 - -
Trre16g03558 465 Pfam GRAS domain family 53 462 IPR005202 -
Trre16g03558 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03558 Trre-Chr16 39338015 39339412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03558 33 464 GRAS Transcription Factor Family AT3G49950 56.193 1.08e-171 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre16g03558 GRAS 5.5e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03558 - - cam:101509453 781.941