Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03556 ATGAGTTGCAATGGTTGCCGAGTTCTTCGCAAAGGTTGTAGCGAAACATGTATTCTACGACCTTGTTTGCAATGGATCGAAACACCAGAAGCTCAAGGTCACGCTACTGTTTTCGTAGCTAAATTCTTCGGTCGTGCTGGTCTCATGTCTTTCATTTCCAACGTTCCTGAACCACAAAGACCAGCTCTGTTTCAGTCTCTATTGTTTGAAGCGTGTGGAAGAACGGTTAACCCTGTGAACGGTGCGGTGGGACTTTTATGGACTGGAAACTGGCACGTGTGTCAGGCAGCGGTTGAGACGGTTCTTCGCGGCGGTGTTCTTAGGCCTTTACCGGAGCTGACGCTCATGGACGCGCCGCCGGTTGCCGCTGATGAAGCGTCTGAGGCGGAAGACGGTGGTGCAGACGCCATTTGGAGGATCCAAGATCCGAATCCGAATTTCCGGTTCACGAGCTCGCGATCTAATAATAAAGTCTCTTCTGGAGTTAAACGCCGACGATCGGAGGAGTCTGTGAAAGTTCCGGCGGCAACTAATCTTGATCTCAGGCTGACACCGATTTTCCTGCAGAAAGAGATGGAAAATCGCAGGCCGGGTTCGCCGTCGATGAATTCTGAGGAATCTGTCACAACGACGGCGTGTTTGGAGACTGGGATTGCAGATCGCTTGGCACACGGTGGTGATCGGAAAGTTCTCAACCTTTTCATATGA 708 0.5099 MSCNGCRVLRKGCSETCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGVLRPLPELTLMDAPPVAADEASEAEDGGADAIWRIQDPNPNFRFTSSRSNNKVSSGVKRRRSEESVKVPAATNLDLRLTPIFLQKEMENRRPGSPSMNSEESVTTTACLETGIADRLAHGGDRKVLNLFI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03556 235 MobiDBLite consensus disorder prediction 149 171 - -
Trre16g03556 235 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Trre16g03556 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 216 - -
Trre16g03556 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03556 Trre-Chr16 39246325 39247138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03556 1 235 AS2 family AT4G37540 58.103 8.31e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g03556 LOB 8.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03556 - - gmx:100802764 342.043