Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03553 ATGTCGCAGAAGTTTGGAAAAGCCACTCGCCGCCCCGGCGCTTCCTCCAAGGCTAGGGTTTATTCTGACGTCAACGTCGTTCGCCCTAAGGAATATTGGGACTACGAAACCCTCACCGTTCAGTGGGGGGAGCAGGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGAAAATACAGTGAGGTGTTTGAAGGTGTTCATTGTACTGATAATGAAAAATGTGTTATTAAGATCCTCAAACCTGTCAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCCAATATTGTGAAGTTGCTTGACATTGTTAGAGACCAGCAGTCCAAGACCCCAAGTCTCATATTTGAATATGTCAATAACACGGACTTTAAAGTACTCTATCCTACACTGTCAGACTATGATATACGATATTATATCTATGAACTTCTAAAGGCATTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCATAATGTAATGATTGACCACACGCAGCGTAAGCTTCGTCTAATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAGTATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGTCCGGAGCTTCTTGTTGATCTTCAAGACTATGATTATTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCCGGGATGATATTCCGGAAGGAGCCCTTCTTTTATGGTCATGATAACTATGATCAACTGGTCAAGATAGCCAGGGTACTTGGGACGGATGAATTAAATGCATATTTGAATAAGTATCGCATTGAGTTAGACCCGCATTTTGCAGCACTTATTGGGAGGCATAGTCGGAAGCCATGGCAAAGGTTCATTAATGTTGAAAATCAACACTTGACTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTGCGATACGATCACCAAGAGCGGCCCACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAATTAGAAACGCCGAAAGTAGCAGTCGAGCACGTGCACATTGA 1047 0.4317 MSQKFGKATRRPGASSKARVYSDVNVVRPKEYWDYETLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHTQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIARVLGTDELNAYLNKYRIELDPHFAALIGRHSRKPWQRFINVENQHLTVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPIRNAESSSRARAH 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03553 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Trre16g03553 348 FunFam Casein kinase II subunit alpha 125 336 - -
Trre16g03553 348 FunFam Casein kinase II subunit alpha 34 124 - -
Trre16g03553 348 CDD STKc_CK2_alpha 29 333 IPR045216 GO:0004674|GO:0006468
Trre16g03553 348 PANTHER CASEIN KINASE II SUBUNIT ALPHA 13 342 IPR045216 GO:0004674|GO:0006468
Trre16g03553 348 ProSiteProfiles Protein kinase domain profile. 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03553 348 Pfam Protein kinase domain 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03553 348 SMART serkin_6 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03553 348 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Trre16g03553 348 SUPERFAMILY Protein kinase-like (PK-like) 19 337 IPR011009 -
Trre16g03553 348 Gene3D Phosphorylase Kinase; domain 1 48 124 - -
Trre16g03553 348 Gene3D Transferase(Phosphotransferase) domain 1 125 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03553 Trre-Chr16 39085048 39091916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03553 46 333 Core Cell Cycle Gene Families AT3G48750 32.558 1.15e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Trre16g03553 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03553 K03097 - gmx:100817795 655.21