Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03550 ATGAAATCTCATCATCATTATTATCATTATCATTTCATTTTTATCATATTCATATCATTATTCTCTCTAACTTCACTCACTCCACTTCCCAACAGAAGAATACTACACCAACCGTTATTAATTCCGGTTACTTCTGCTCCGCCGCCGGAATTCTCTCCGCCTCCTCCAGACATCACTCCTCCCTCACCTGACATTCCGTTTTTCAATGAATTTCCAACCGGACCACCGCCTCCGGTGGTTGCCACCAACAATCCGAATCTACCGTCGCCGTCAGTTGCTAACTCAACAATTGCAAATCCAACGGCGACGAAACCTACTAAACCGGCTAAGAAAGTTGCAATTGCGGTTTCAGTGGCATTTTCGATATTTGTCATGTTCTCCATTGTAGCTTTCTTCTTGTTTAAGCATAGAATGAAACACTCGTCGGAACCAGATAAGCGGAAATTCGTCGGTGAGAATTTTAATAGAGTTCTAGAAGATTCCACGCGGGCTCCACCACTACCACCGCCGTCATCATCAACAAGTTTCCTCTACATTGGAACAGTGGTAGAGCCTAACGGAACGCCGGTAGGTGTGACCAACCCTCACAAGGTTAATCGTTACCGTCCGAGTCCAGAGTTGCATCCATTGCCGCCGCTTACGAAGTCTCTCGTCGTAGATAGTCAATCTCCACCGGCGGCGTCTTCGTCGTCGTCGTCATCGGATAACGATGAAAGTCGCGACACGGCATTTCATTCACCGGAAGAGTCTTCCTCACTCAATCTCAGCCGTGAAGACAATTTTTACACGCCGGTTTCCCGTCAAAGTTCTCTCACAAACGGAAGTCCAACCGCGCCGGTTGCGGTAACTCCGGTGGTTCCTTTTTCTAAGAGAACTTCGCCGAAATCTCGATTTTCTAGTTCTTCTCCGGTGATGATACCATCGATAGGTAGTGGTAGTGGTTCTTCTAGAAAGCCGAAATTCTCATCGCCGCCACCAGCGCCAAATTTGACGCATCTTCATTCAAATGACTCTATAGCTTCACTTAACCTTCCTCCTCCTCCTCCTCCACCTCCGCCATTACCGAGAAATGGTTGGTTGCCGGCAGTTAGTGCACCATCATCCTCTGTTTCAAGGAAGCATCAACGGTCTCATTCTTCAATTCATGAAGCAGATTCTGCATCTGGTAATAGTTTCAATGTGAAGAAAGCTTTGAAAGAAGATGATGAAATAGAATTTGATGAAGGAAATGGAAAACCTAAATTGAAAGCTCTTCATTGGGATAAAGTTCGTGCTACTTCAGATCGTGCTACTGTATGGGACCAATTAAAATCAAGCTCATTTCAGTTAAATGAGGATATGATGGAGACACTGTTTGGTTGTAATTCATCAAATACTGTCCCTAAAGCTAAAGAGATGTCTGTTACCAGGAAACCAGTTTTTGCTACTGTTGAACATGAGACTAGGGTGTTAGATCCTAAGAAATCACAAAATATAGCTATATTACTCAGGGCATTGAATGTCACAAGAGATGAGGTTTCTGAAGCTCTTTTAGATGGAAATCCTGAAGGTTTGGGTGCTGAGTTATTTGAAACTCTAGTGAAGATGGCTCCTACAAAGGAGGAGGAGATAAAACTAAAAAATTATGATGGTGACCTTTCAAAACTTGGTCCTGCAGAAAGATTTCTTAAGCAAGTGCTTGATATCCCTTTAGCTTTTAAAAGAGTTGAAGCCATGTTGTACAGAGCTAATTTTGAAACAGAAGTTAACTACCTTACGAAATCCTTTCAGTCCCTCGAGGTGTCAAGCGAGGAATTAAAGAACAGCCGCTTGTTCCTCAAACTCCTTGAAGCTGTTCTCATGACAGGTAACAGAATGAATGTTGGAACCAATCGCGGTGGTGCTAAATCTTTCAAACTGGACACACTCTTGAAACTTGCAGATATAAAAGGAACAGACGGAAAGACAACATTGCTCCATTTTGTTGTGCAAGAGATTATTAGATCTGAAGGTACGGGTGCTGAATCCACAAATGAGAATGTTCAAAACCAAACAAATCCGCAGTTCAATGAGGATGAGTTCAGAAAGAAAGGATTACAGGTTGTGGCTGGATTGAGTAGAGACTTTGGTAATGTAAAAAAGGCGGCAGGAATGGACTCGGATGTCTTAAGCAGCTATGTTATAAAACTTGAAATGGGACTTGATAAAGTGAGATTGGTTTTGCAATATGTAAAACCAGATATGCAAGGAAACTTCTTTAACTCAACAGAGACATTTATGAAAGATGCTGAAGAGAAAATATTAAAGATCAAGGCTGATGAGATAAGGGCCTTATTCCTTGTGAAAGAAGTTACAGAATACTTTCATGGGGATACAACAAAGGAAGAAGCTCACCCTTTTAGAATTTTTATTATTGTAAGAGACTTTCTAAATATTTTGGATCAAGTATGCAAAGAAGTGGGAATAATGCAGGATAGAACTTCGATCGGTTCAGCCAGATCGTTCAGAATAGCCGCAAATGCATCGTTACCTGTTCTCAACAGGTACCGTGCAAGACAAGATACAAGTTCAGATGACGAAAGTTTATCACCCTAG 2574 0.4204 MKSHHHYYHYHFIFIIFISLFSLTSLTPLPNRRILHQPLLIPVTSAPPPEFSPPPPDITPPSPDIPFFNEFPTGPPPPVVATNNPNLPSPSVANSTIANPTATKPTKPAKKVAIAVSVAFSIFVMFSIVAFFLFKHRMKHSSEPDKRKFVGENFNRVLEDSTRAPPLPPPSSSTSFLYIGTVVEPNGTPVGVTNPHKVNRYRPSPELHPLPPLTKSLVVDSQSPPAASSSSSSSDNDESRDTAFHSPEESSSLNLSREDNFYTPVSRQSSLTNGSPTAPVAVTPVVPFSKRTSPKSRFSSSSPVMIPSIGSGSGSSRKPKFSSPPPAPNLTHLHSNDSIASLNLPPPPPPPPPLPRNGWLPAVSAPSSSVSRKHQRSHSSIHEADSASGNSFNVKKALKEDDEIEFDEGNGKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGCNSSNTVPKAKEMSVTRKPVFATVEHETRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGAELFETLVKMAPTKEEEIKLKNYDGDLSKLGPAERFLKQVLDIPLAFKRVEAMLYRANFETEVNYLTKSFQSLEVSSEELKNSRLFLKLLEAVLMTGNRMNVGTNRGGAKSFKLDTLLKLADIKGTDGKTTLLHFVVQEIIRSEGTGAESTNENVQNQTNPQFNEDEFRKKGLQVVAGLSRDFGNVKKAAGMDSDVLSSYVIKLEMGLDKVRLVLQYVKPDMQGNFFNSTETFMKDAEEKILKIKADEIRALFLVKEVTEYFHGDTTKEEAHPFRIFIIVRDFLNILDQVCKEVGIMQDRTSIGSARSFRIAANASLPVLNRYRARQDTSSDDESLSP 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03550 857 MobiDBLite consensus disorder prediction 216 237 - -
Trre16g03550 857 MobiDBLite consensus disorder prediction 342 359 - -
Trre16g03550 857 PANTHER FORMIN-RELATED 15 851 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre16g03550 857 MobiDBLite consensus disorder prediction 187 258 - -
Trre16g03550 857 SUPERFAMILY Formin homology 2 domain (FH2 domain) 345 816 - -
Trre16g03550 857 ProSiteProfiles Formin homology-2 (FH2) domain profile. 405 832 IPR015425 -
Trre16g03550 857 Gene3D Formin, FH2 domain 414 832 IPR042201 -
Trre16g03550 857 MobiDBLite consensus disorder prediction 289 320 - -
Trre16g03550 857 SMART it6_source 405 821 IPR015425 -
Trre16g03550 857 MobiDBLite consensus disorder prediction 289 388 - -
Trre16g03550 857 Pfam Formin Homology 2 Domain 410 806 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03550 Trre-Chr16 38713429 38717351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03550 412 847 FH2 protein (formin) Gene Family AT5G67470 72.437 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03550 - - gmx:100803578 927.546