Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03548 ATGGACACATCTTTCCTTTTATGTGATGATGAAGACCATACTTTCCCCTTCATGCATAACAACGATGACAATGAAAATATTACCATCAACTCATTGAACCAAAATCTCAATTCCAAATATGAAAAGGAACACATTGAGTATTTGTTTACACTTGAAAAAAGAAAGTTCCCATCCTTCTTCACTTATTGCTTCAAGCATGTCAACTTCAACAACATACGTATTAATGCCATTGACCACATTTTCAAAATGCAAGAAAAACTTGGATTCAAGCTATGTACAGCTTATTTGTCACTGACATACTTTGATCAGTTTCTTTTGAAGCAACACAAACAAATCTATGAAGAGATGTATGTTCAGCTATTATCCGTGGCATGCGTGTCTCTTGCTGCGAAGATGATCGAAGAGCGTGATCTACCGCTTCTATTTCAATACATCACGGAAATATACGAAGAGCAAAATTTTGTTGACAAGCGATGTATTGGGGAGATGGAGGCAGAAGTTTTTAGTACATTGGAATGGGAATTGACAACTGTCACTCCTTTTGATTTTCTTCATTACTTTGTTTACTTGTTCTGCCCTGAATCTCCACCGGAACCATTGATCTCACAAGCTGTAGAACATGTTTTGGCTATCCTGAAAGATGTTAATTTGATGGATCATAGGCCATCCACTATTGCCTTGGCTGCCACATTGATGGTGGCTTCTGATGCTGCATTAACAAGAGAGATCATGGATCTGCAGATAGGTGAAATCTTATTGCAGCTAACTTTAGACAGAGAAGGTGTGTTTTACTGTTACCATCTAATGCAGGAAAAATGTACTGAGAGAGTAAAGTTAAATAACCCTGCCTCAACTTTGACAGCCCAATGGAGCTACACATATGCTCTTGACCATTCTTCTGTTACTTCTTCTACAGTTAGGAGAAAACTTGGTTTTGAAAATAAAGAAAATTGTCCTAGGCAGAGATCACATTGTCCTTAG 981 0.3772 MDTSFLLCDDEDHTFPFMHNNDDNENITINSLNQNLNSKYEKEHIEYLFTLEKRKFPSFFTYCFKHVNFNNIRINAIDHIFKMQEKLGFKLCTAYLSLTYFDQFLLKQHKQIYEEMYVQLLSVACVSLAAKMIEERDLPLLFQYITEIYEEQNFVDKRCIGEMEAEVFSTLEWELTTVTPFDFLHYFVYLFCPESPPEPLISQAVEHVLAILKDVNLMDHRPSTIALAATLMVASDAALTREIMDLQIGEILLQLTLDREGVFYCYHLMQEKCTERVKLNNPASTLTAQWSYTYALDHSSVTSSTVRRKLGFENKENCPRQRSHCP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03548 326 Pfam Cyclin, N-terminal domain 45 175 IPR006671 -
Trre16g03548 326 Gene3D - 47 242 - -
Trre16g03548 326 PANTHER CYCLINS 37 273 IPR039361 -
Trre16g03548 326 Pfam Cyclin, C-terminal domain 178 287 IPR004367 -
Trre16g03548 326 CDD CYCLIN_AtCycD-like_rpt2 178 269 - -
Trre16g03548 326 Gene3D - 58 176 - -
Trre16g03548 326 SUPERFAMILY Cyclin-like 35 175 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03548 Trre-Chr16 38711478 38712861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03548 71 282 Core Cell Cycle Gene Families AT1G70210 33.803 1.49e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03548 K18811 - gmx:100808000 231.106