Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03540 ATGTCTCAAGGAATGCAGAATGCAGAACAGGCCCTTCTCTCCGGATGCTCCGCAGGTGGTCTAGCATCCATAATACATTGTGATGAGTTCCAGAGCTTGTTACCAAAACCTTCCAAAGTGAAGTGTATTAGTGATGCAGGATTTTTTCTCGAAATTGATGTATCTGGAGGACGGTCACTGAGGGATCTGTTTGGAGGCGTTGTTCAGTTACAGGAAGTTTACAAAAATCTGCCGAAAAATTGTATAAGCCGACTGGACCCAACTTCGTGCTTCTTTCCTCAAAATTTGGTAGAACATGTGGAGACACCACTGTTTCTACTCAACGCGGCTTATGATGTTGTGGCAGCTGAACATTGTTTGATAGGCAGCTTAGTTAACAAAATTTGA 387 0.4315 MSQGMQNAEQALLSGCSAGGLASIIHCDEFQSLLPKPSKVKCISDAGFFLEIDVSGGRSLRDLFGGVVQLQEVYKNLPKNCISRLDPTSCFFPQNLVEHVETPLFLLNAAYDVVAAEHCLIGSLVNKI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03540 128 PANTHER NOTUM-RELATED 1 121 IPR004963 GO:0016787
Trre16g03540 128 Pfam Pectinacetylesterase 1 125 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03540 Trre-Chr16 38565833 38566967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03540 1 112 Carbohydrate Esterase AT1G57590 67.257 3.89e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03540 K19882 - gmx:100786972 196.438