Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03538 ATGGATACATTGTTTAGGCTAGTCAATTTTCACCAACAACCACAATATCAACCTGATCCTTCCATCAACTCCACCACCACCTTAACAACATCAAGCAGTTCTAGATCCTCAAGACAAACAACACCAACAACAACATATTACTACAATCATCAACAACAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAATAATGAAGAAGACTTATCTTCATCTTCTTCTAAACAGCATTACTATAATTATCCTTATGATCAAACTCATCACCACCATGTTTCTCCTACTACTACAAACACACACACCACCTTTAATACTATTAACACCCCCACAAACACCGATATTAATTACTCTTATTCACCCTCTCAAGACTACTTCAACTTCGATTTCTCCGGTAACAACTCATGGTCACAAAACATCCTCCTTGAAACTGCACGTGCTATTTCCAACAACAACACAAACCGAATCCAACAACTTATGTGGATGCTAAATGAGCTAAGTTCTCCTTATGGCGACACGGATCAAAAACTTTCATCTTATTTTCTTCAAGCTTTGTTTAGTCGAATGAATGATGCAGGTGATAGAACCTACAAAACTTTAACATTTGCGTCGGAGAAAACATGTTCTTTTGATTCAACAAGGAAGATGTTGTTGAAGTTTCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCATCAAATGGAGCTATATTAGAAGCATTAGAAGGTAACCCTAAACTTCACATAATTGATATAAGCAACACTTATTGCACTCAGTGGCCAACGCTTCTCGAAGCATTGGCCACTCGCTCTGATGATACACCTCATCTTCGTTTAACCACTGTGGTCACCGCAGTCAGCGGTGGCTCAGTTCAAAAAGTCATGAAGGAAATTGGTTCAAGAATGGAAAAATTCGCGAGGCTAATGGGTGTGCCGTTTAAATTCAAAATCATTTTCAGCGATTTAAGAGAGTTGAATTTAAGTGATTTAGATATCAAAGAAGATGAAGCTTTGGCTATAAATTGTGTTAACTCTTTGCACTCAATATCCGGCGCGGGAAACCACCGCGACAAATTTATATCTTTGCTTCGAGAATTAGAGCCTAGGGTTATGACGGTGGTTGAAGAAGAAGCCGATTTCGAGGTTTGTTTCGGTTCGGATTTCGTCGAAGGTTTTGGAGAGTGTTTAAGGTGGTTTAGGGTTTATTTTGAAGCACTTGAAGAGAGTTTTTCAAGAACAAGTTGCGAAAAGTTGATGCTAGAAAGAGAAGCAGGGAGAAGTATTGTTGATTTAGTTGCTTGTGATGCATTTGAATCAGTGGAGAGACGTGAAACGGCGTCACGGTGGAGGAGAAGGTTGCATGGTGGAGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAGAGAAGGGTGGTCAATGACACAGTGTTCTTCTTCTTCCGATGACGGAATATTCTTGTCGTGGAAGGAAAAGCCGGTGGTGTGGGCCAGTGTGTGGAGGCCATGA 1560 0.4 MDTLFRLVNFHQQPQYQPDPSINSTTTLTTSSSSRSSRQTTPTTTYYYNHQQQQEEDEECFNNFYYMDHNNNNEEDLSSSSSKQHYYNYPYDQTHHHHVSPTTTNTHTTFNTINTPTNTDINYSYSPSQDYFNFDFSGNNSWSQNILLETARAISNNNTNRIQQLMWMLNELSSPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTFASEKTCSFDSTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAVSGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLSDLDIKEDEALAINCVNSLHSISGAGNHRDKFISLLRELEPRVMTVVEEEADFEVCFGSDFVEGFGECLRWFRVYFEALEESFSRTSCEKLMLEREAGRSIVDLVACDAFESVERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYREGWSMTQCSSSSDDGIFLSWKEKPVVWASVWRP 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03538 519 MobiDBLite consensus disorder prediction 12 42 - -
Trre16g03538 519 Pfam GRAS domain family 145 518 IPR005202 -
Trre16g03538 519 ProSiteProfiles GRAS family profile. 134 518 IPR005202 -
Trre16g03538 519 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 508 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03538 Trre-Chr16 38558792 38560351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03538 1 519 GRAS Transcription Factor Family AT4G37650 55.596 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre16g03538 GRAS 1.4e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03538 - - tpra:123919748 898.271