Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03524 ATGAGTAACAGAATCAAATCGTTCAAGACTGTTATTTCCCCAAACGAGGAAAATATTGAAATTTGTCCAAAATTCCGAGCGGCTTGGAATGATAAGTTAACTCGTGACCCCTGTGGATATTTGGTACATCCTACTGGAAATGCAGTGTTCCTTGAACTACAACTACAAAATGGAAACTGTTACATGACTCCAGGAAAAGTTGTTTCAATTTTATTTGGAATTAGAGAACCTACTGAGGTCATTCTAACCTATAAAATCCATGACAATTTTTTTAATTTAAAATTTATCCAACAAGGTGTTATTGACATCTCAAGTGACGATGAATCAGATGATGAATATGTAATTCAATCACATAATTATATTTTACATGACTTTGACAATGATGGTGTGTTTGGTTGGGAGAGGATTATGACGGAAGCTGCTGCAAATGACAAAAAAAACCAGGTTTTGCACATTCCACCACAAACTGCTCAGTATGTACTTAGAGATATGAAGAATATTAAAATTAAAACTCTGCACAATTTGAATGGAAGCAATTTGACCATCACAACTTACACAAGGCCAAATGGAAGGAAGGATATGTACTTCACTGAAGGATGGTATGCATTCAAGAAAGCTAACAGAATTGAAAAGGGAGACAAGCTGGAATTTAAGGTTTCTGATCCACCTGAAGTTGTTCTTATCAACATTGTTCGCCACAACAATTGA 708 0.3531 MSNRIKSFKTVISPNEENIEICPKFRAAWNDKLTRDPCGYLVHPTGNAVFLELQLQNGNCYMTPGKVVSILFGIREPTEVILTYKIHDNFFNLKFIQQGVIDISSDDESDDEYVIQSHNYILHDFDNDGVFGWERIMTEAAANDKKNQVLHIPPQTAQYVLRDMKNIKIKTLHNLNGSNLTITTYTRPNGRKDMYFTEGWYAFKKANRIEKGDKLEFKVSDPPEVVLINIVRHNN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03524 235 Gene3D - 132 235 IPR015300 -
Trre16g03524 235 CDD B3_DNA 150 218 IPR003340 GO:0003677
Trre16g03524 235 ProSiteProfiles B3 DNA-binding domain profile. 135 234 IPR003340 GO:0003677
Trre16g03524 235 Pfam B3 DNA binding domain 142 228 IPR003340 GO:0003677
Trre16g03524 235 SUPERFAMILY DNA-binding pseudobarrel domain 137 225 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03524 Trre-Chr16 38395138 38396188 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03524 B3 2.4e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03524 - K01874 tpra:123886203 216.468