Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03484 ATGAAGAGAATGATGGAAAATGATGATGATGATGGTGTTGACATTAACAATGAAAATAACTGGTTGGGTTTTTCACTCTCTCCTCAAATGAATAATGTTGATATTCCTTCACATACTCATCAGTCACAAAATTCTTCTTCTGTTTCTCAAGTAGTTCCACTTCCATCAAGCTTTTACAATTCTACCCCTCTTAGTAACTATTGTTTCTCCTCTTATGGACTTGAACATGAAAATGTTGGTTTGTATTCTTTACTTCCCATTATGCCCCTCAAATCTGATGGATCTCTTTATGAAATGGAATCTCTTAGCAGGTCACAAACACAAGCAATGGCTACTACTTCAGAACCAAAACTAGAGAATTTCTTAGGTAATGAAACTATGGGGACCCCTCATTATGCATGTACTAGTACTACTGTCACAGAAACAATGCCTTTGAGTTTAGACAGTATGTTCCAAAATCAAGTTCAACACATGAACAATCAACAACAATTATCATATTATGATTTAATGTTAGAAGGGTCAAAGCAAAACCAAAATTCAAGTGGAAATTTCAATGTTTCAAACATGGGTGAAGATCATGGACTTAGTGGTTTAAAGAATTGGGTTTTAAGGAATTTTCCAACTAATCATGGACATGATCAGTCAAAAATGATTGTTCCTGTTGTTGTAGATGAAAATGTAGGTGAATCTTGTTCCAATATTGGATCAATGACTTATGGTGATTTGCATTCTTTGAGCTTATCAATGAGTCCTAGCTCACAGTCTAGCTGTGTTACAACTTCTCAGAATATGTCTTCAACTGTTATTGATAATTCTGTTGCTTTGGATACTAAGAAAAGAGGAAATGAAAAGATTGAGCAGAAACAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACCGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGTTTATCTTGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGACACCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGGGTTGCTGGTAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCGGCTGAAGCCTACGACATAGCGGCTATAAAATTTAGAGGAGCTAATGCAGTAACAAACTTTGATATCATAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCATTGATCTAGCAAGAAGGAACAAAGTAGTAGATATTAGTACAACTCAATGCATTGATCAAAACAAGCCTAATTCATCATCTGCATATGACAATAACACTCAAGAAGCAATTTTAATGCAGAAGAATATGGTTCTGTATCAATCCTCTCAACAACAGAATCAACCAAGAATTGACAATGAAAGAACTCATCAATCTTTTTCATCGGTATCTTTCGATAACATGTTCCATCAAGAAATAGTAGTAGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGGGAAGGTAGTCCTGATAAAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCTAAACTATTGGCTACTACTTCTCCAAATAGTAATGTGAATTCATGGGACCCTTCACATCATCTTAGGACTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1929 0.3618 MKRMMENDDDDGVDINNENNWLGFSLSPQMNNVDIPSHTHQSQNSSSVSQVVPLPSSFYNSTPLSNYCFSSYGLEHENVGLYSLLPIMPLKSDGSLYEMESLSRSQTQAMATTSEPKLENFLGNETMGTPHYACTSTTVTETMPLSLDSMFQNQVQHMNNQQQLSYYDLMLEGSKQNQNSSGNFNVSNMGEDHGLSGLKNWVLRNFPTNHGHDQSKMIVPVVVDENVGESCSNIGSMTYGDLHSLSLSMSPSSQSSCVTTSQNMSSTVIDNSVALDTKKRGNEKIEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIDLARRNKVVDISTTQCIDQNKPNSSSAYDNNTQEAILMQKNMVLYQSSQQQNQPRIDNERTHQSFSSVSFDNMFHQEIVVEEASKMRTHVSNASSLATSLSSSREGSPDKTSLQNLSGIMPSTASKLLATTSPNSNVNSWDPSHHLRTQMPVFAAWTDA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03484 642 PRINTS Ethylene responsive element binding protein signature 447 467 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 SUPERFAMILY DNA-binding domain 304 373 IPR016177 GO:0003677
Trre16g03484 642 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 109 547 - -
Trre16g03484 642 SMART rav1_2 407 471 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 SMART rav1_2 305 377 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 MobiDBLite consensus disorder prediction 579 600 - -
Trre16g03484 642 CDD AP2 406 466 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 ProSiteProfiles AP2/ERF domain profile. 407 465 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 FunFam AP2-like ethylene-responsive transcription factor ANT 304 373 - -
Trre16g03484 642 Pfam AP2 domain 305 363 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 Pfam AP2 domain 408 457 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 CDD AP2 304 371 IPR001471 GO:0003700|GO:0006355
Trre16g03484 642 Gene3D AP2/ERF domain 407 467 IPR036955 GO:0003700|GO:0006355
Trre16g03484 642 Gene3D AP2/ERF domain 304 373 IPR036955 GO:0003700|GO:0006355
Trre16g03484 642 FunFam AP2-like ethylene-responsive transcription factor 406 467 - -
Trre16g03484 642 SUPERFAMILY DNA-binding domain 406 465 IPR016177 GO:0003677
Trre16g03484 642 ProSiteProfiles AP2/ERF domain profile. 305 371 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03484 Trre-Chr16 37764713 37767893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03484 1 489 AP2-EREBP Transcription Factor Family AT4G37750 52.015 5.99e-158 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g03484 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03484 K09285 - gmx:100792451 820.846