Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03483 ATGAAGAGAATGATGGAAAATGATGATGATGATGGTGTTGACATTAACAATGAAAATAACTGGTTGGGTTTTTCACTCTCTCCTCAAATGAATAATGTTGATATTCCTTCACATACTCATCAGTCACAAAATTCTTCTTCTGTTTCTCAAGTAGTTCCACTTCCATCAAGCTTTTACAATTCTACCCCTCTTAGTAACTATTGTTTCTCCTCTTATGGACTTGAACATGAAAATGTTGGTTTGTATTCTTTACTTCCCATTATGCCCCTCAAATCTGATGGATCTCTTTATGAAATGGAATCTCTTAGCAGGTCACAAACACAAGCAATGGCTACTACTTCAGAACCAAAACTAGAGAATTTCTTAGGTAATGAAACTATGGGGACCCCTCATTATGCATGTACTAGTACTACTGTCACAGAAACAATGCCTTTGAGTTTAGACAGTATGTTCCAAAATCAAGTTCAACACATGAACAATCAACAACAATTATCATATTATGATTTAATGTTAGAAGGGTCAAAGCAAAACCAAAATTCAAGTGGAAATTTCAATGTTTCAAACATGGGTGAAGATCATGGACTTAGTGGTTTAAAGAATTGGGTTTTAAGGAATTTTCCAACTAATCATGGACATGATCAGTCAAAAATGATTGTTCCTGTTGTTGTAGATGAAAATGTAGGTGAATCTTGTTCCAATATTGGATCAATGACTTATGGTGATTTGCATTCTTTGAGCTTATCAATGAGTCCTAGCTCACAGTCTAGCTGTGTTACAACTTCTCAGAATATGTCTTCAACTGTTATTGATAATTCTGTTGCTTTGGATACTAAGAAAAGAGGAAATGAAAAGATTGAGCAGAAACAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACCGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGCAGACACCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGGGTTGCTGGTAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCGGCTGAAGCCTACGACATAGCGGCTATAAAATTTAGAGGAGCTAATGCAGTAACAAACTTTGATATCATAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCATTGATCTAGCAAGAAGGAACAAAGTAGTAGATATTAGTACAACTCAATGCATTGATCAAAACAAGCCTAATTCATCATCTGCATATGACAATAACACTCAAGAAGCAATTTTAATGCAGAAGAATATGGTTCTGTATCAATCCTCTCAACAACAGAATCAACCAAGAATTGACAATGAAAGAACTCATCAATCTTTTTCATCGGTATCTTTCGATAACATGTTCCATCAAGAAATAGTAGTAGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGGGAAGGTAGTCCTGATAAAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCTAAACTATTGGCTACTACTTCTCCAAATAGTAATGTGAATTCATGGGACCCTTCACATCATCTTAGGACTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1923 0.363 MKRMMENDDDDGVDINNENNWLGFSLSPQMNNVDIPSHTHQSQNSSSVSQVVPLPSSFYNSTPLSNYCFSSYGLEHENVGLYSLLPIMPLKSDGSLYEMESLSRSQTQAMATTSEPKLENFLGNETMGTPHYACTSTTVTETMPLSLDSMFQNQVQHMNNQQQLSYYDLMLEGSKQNQNSSGNFNVSNMGEDHGLSGLKNWVLRNFPTNHGHDQSKMIVPVVVDENVGESCSNIGSMTYGDLHSLSLSMSPSSQSSCVTTSQNMSSTVIDNSVALDTKKRGNEKIEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIDLARRNKVVDISTTQCIDQNKPNSSSAYDNNTQEAILMQKNMVLYQSSQQQNQPRIDNERTHQSFSSVSFDNMFHQEIVVEEASKMRTHVSNASSLATSLSSSREGSPDKTSLQNLSGIMPSTASKLLATTSPNSNVNSWDPSHHLRTQMPVFAAWTDA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03483 640 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 PRINTS Ethylene responsive element binding protein signature 445 465 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 109 545 - -
Trre16g03483 640 FunFam AP2-like ethylene-responsive transcription factor ANT 304 370 - -
Trre16g03483 640 Pfam AP2 domain 405 455 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 Pfam AP2 domain 305 360 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 FunFam AP2-like ethylene-responsive transcription factor 403 465 - -
Trre16g03483 640 CDD AP2 403 464 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 ProSiteProfiles AP2/ERF domain profile. 305 368 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 ProSiteProfiles AP2/ERF domain profile. 404 463 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 SUPERFAMILY DNA-binding domain 403 463 IPR016177 GO:0003677
Trre16g03483 640 CDD AP2 304 368 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 MobiDBLite consensus disorder prediction 577 598 - -
Trre16g03483 640 SMART rav1_2 404 469 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 SMART rav1_2 305 374 IPR001471 GO:0003700|GO:0006355
Trre16g03483 640 SUPERFAMILY DNA-binding domain 304 370 IPR016177 GO:0003677
Trre16g03483 640 Gene3D AP2/ERF domain 404 465 IPR036955 GO:0003700|GO:0006355
Trre16g03483 640 Gene3D AP2/ERF domain 304 370 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03483 Trre-Chr16 37764713 37767893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03483 1 487 AP2-EREBP Transcription Factor Family AT4G37750 51.341 1.04e-151 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g03483 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03483 K09285 - gmx:100792451 815.839