Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03482 ATGAAGAGAATGATGGAAAATGATGATGATGATGGTGTTGACATTAACAATGAAAATAACTGGTTGGGTTTTTCACTCTCTCCTCAAATGAATAATGTTGATATTCCTTCACATACTCATCAGTCACAAAATTCTTCTTCTGTTTCTCAAGTAGTTCCACTTCCATCAAGCTTTTACAATTCTACCCCTCTTAGTAACTATTGTTTCTCCTCTTATGGACTTGAACATGAAAATGTTGGTTTGTATTCTTTACTTCCCATTATGCCCCTCAAATCTGATGGATCTCTTTATGAAATGGAATCTCTTAGCAGGTCACAAACACAAGCAATGGCTACTACTTCAGAACCAAAACTAGAGAATTTCTTAGGTAATGAAACTATGGGGACCCCTCATTATGCATGTACTAGTACTACTGTCACAGAAACAATGCCTTTGAGTTTAGACAGTATGTTCCAAAATCAAGTTCAACACATGAACAATCAACAACAATTATCATATTATGATTTAATGTTAGAAGGGTCAAAGCAAAACCAAAATTCAAGTGGAAATTTCAATGTTTCAAACATGGGTGAAGATCATGGACTTAGTGGTTTAAAGAATTGGGTTTTAAGGAATTTTCCAACTAATCATGGACATGATCAGTCAAAAATGATTGTTCCTGTTGTTGTAGATGAAAATGTAGGTGAATCTTGTTCCAATATTGGATCAATGACTTATGGTGATTTGCATTCTTTGAGCTTATCAATGAGTCCTAGCTCACAGTCTAGCTGTGTTACAACTTCTCAGAATATGTCTTCAACTGTTATTGATAATTCTGTTGCTTTGGATACTAAGAAAAGAGGAAATGAAAAGATTGAGCAGAAACAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACCGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGACACCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGGGTTGCTGGTAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCGGCTGAAGCCTACGACATAGCGGCTATAAAATTTAGAGGAGCTAATGCAGTAACAAACTTTGATATCATAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCATTGATCTAGCAAGAAGGAACAAAGTAGTAGATATTAGTACAACTCAATGCATTGATCAAAACAAGCCTAATTCATCATCTGCATATGACAATAACACTCAAGAAGCAATTTTAATGCAGAAGAATATGGTTCTGTATCAATCCTCTCAACAACAGAATCAACCAAGAATTGACAATGAAAGAACTCATCAATCTTTTTCATCGGTATCTTTCGATAACATGTTCCATCAAGAAATAGTAGTAGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGGGAAGGTAGTCCTGATAAAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCTAAACTATTGGCTACTACTTCTCCAAATAGTAATGTGAATTCATGGGACCCTTCACATCATCTTAGGACTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1920 0.3625 MKRMMENDDDDGVDINNENNWLGFSLSPQMNNVDIPSHTHQSQNSSSVSQVVPLPSSFYNSTPLSNYCFSSYGLEHENVGLYSLLPIMPLKSDGSLYEMESLSRSQTQAMATTSEPKLENFLGNETMGTPHYACTSTTVTETMPLSLDSMFQNQVQHMNNQQQLSYYDLMLEGSKQNQNSSGNFNVSNMGEDHGLSGLKNWVLRNFPTNHGHDQSKMIVPVVVDENVGESCSNIGSMTYGDLHSLSLSMSPSSQSSCVTTSQNMSSTVIDNSVALDTKKRGNEKIEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIDLARRNKVVDISTTQCIDQNKPNSSSAYDNNTQEAILMQKNMVLYQSSQQQNQPRIDNERTHQSFSSVSFDNMFHQEIVVEEASKMRTHVSNASSLATSLSSSREGSPDKTSLQNLSGIMPSTASKLLATTSPNSNVNSWDPSHHLRTQMPVFAAWTDA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03482 639 CDD AP2 403 463 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 MobiDBLite consensus disorder prediction 576 597 - -
Trre16g03482 639 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 109 544 - -
Trre16g03482 639 FunFam AP2-like ethylene-responsive transcription factor ANT 304 370 - -
Trre16g03482 639 Gene3D AP2/ERF domain 304 370 IPR036955 GO:0003700|GO:0006355
Trre16g03482 639 Gene3D AP2/ERF domain 404 464 IPR036955 GO:0003700|GO:0006355
Trre16g03482 639 PRINTS Ethylene responsive element binding protein signature 444 464 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 ProSiteProfiles AP2/ERF domain profile. 305 368 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 Pfam AP2 domain 405 454 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 Pfam AP2 domain 305 360 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 FunFam AP2-like ethylene-responsive transcription factor 403 464 - -
Trre16g03482 639 SUPERFAMILY DNA-binding domain 403 462 IPR016177 GO:0003677
Trre16g03482 639 CDD AP2 304 368 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 SMART rav1_2 305 374 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 SMART rav1_2 404 468 IPR001471 GO:0003700|GO:0006355
Trre16g03482 639 SUPERFAMILY DNA-binding domain 304 370 IPR016177 GO:0003677
Trre16g03482 639 ProSiteProfiles AP2/ERF domain profile. 404 462 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03482 Trre-Chr16 37764713 37767893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03482 1 486 AP2-EREBP Transcription Factor Family AT4G37750 51.440 1.62e-153 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g03482 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03482 K09285 - gmx:100792451 809.675