Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03478 ATGGGGAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAGAGAGGTCCATGGTCACCTGAAGAAGACTCCAAACTCAAATCTTATATCCAACAACATGGCACTGGTGGCAACTGGATTGCCCTTCCAAACAAAATAGGTCTCAAAAGAAGAGAACATTATTTGCAGCCTCTATACCAATATCGGAAGCAGGTGGTCCGTTATAGCAGCACAATTACCAGGACGAACAGATAA 231 0.4416 MGRAPCCDKANVKRGPWSPEEDSKLKSYIQQHGTGGNWIALPNKIGLKRREHYLQPLYQYRKQVVRYSSTITRTNR 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03478 76 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 35 IPR017930 -
Trre16g03478 76 ProSiteProfiles Myb-like domain profile. 9 49 IPR001005 -
Trre16g03478 76 CDD SANT 16 55 IPR001005 -
Trre16g03478 76 PANTHER OS09G0431300 PROTEIN 1 49 - -
Trre16g03478 76 SUPERFAMILY Homeodomain-like 8 52 IPR009057 -
Trre16g03478 76 Gene3D - 6 75 - -
Trre16g03478 76 Pfam Myb-like DNA-binding domain 14 50 IPR001005 -
Trre16g03478 76 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03478 Trre-Chr16 37713002 37713706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03478 1 49 MYB Transcription Factor Family AT3G49690 87.755 1.52e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g03478 Myb_DNA-binding 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03478 K09422 - pop:7467242 105.145