Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03474 ATGGGTCTTAATAACCAAGATGCTAGTAACAATCCAAGCCTTCAACTTATTCTAGGCTTAGCTCTCACTCTTACCAAACAAGACACACCTACATCATCCAACAACAACGTTGTCACAAAACCATATTCATCAAGTAATAATGAAACAGAACCATCTTTAACGTTGGGTTTATCCAATAAAAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAATTCACCTCATCATAGCGTTGTTTCTTCTTTCTCTAGTGGAAGAGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACAACTGAAATTGAGAGAGTTTCTTCAAGAATCAGTGATGAAGAAGAAGATGGTGCTACTGCAGCTAGAAAAAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAACAAAAGCAAGCTTTAGCTAGAGAGTTAAATCTAACACCTCGACAAGTTGAAGTTTGGTTCCAGAACCGGAGAGCTAGAACAAAGCTGAAGCAAACAGAGGTAGATTGTGAGTTTCTAAAGAAATGTTGTGAAACATTATCAGATGAGAATAGGAGGCTACAAAAAGAGGTACAAGAATTGAAGGCACTAAAATTAGGACAACCTTTGTATATGCCTATGCCAGCTGCTACCCTTAGTATGTGCCCTTCTTGTGAGAGATTAGGTGGTGGTGGCGGCGGTGGTGTTAATGGTGGTTCTTCCAATAAGAACAATTTCTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTTACCAATTCTTCTGCAGCATGTTGA 828 0.3865 MGLNNQDASNNPSLQLILGLALTLTKQDTPTSSNNNVVTKPYSSSNNETEPSLTLGLSNKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEIERVSSRISDEEEDGATAARKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLSDENRRLQKEVQELKALKLGQPLYMPMPAATLSMCPSCERLGGGGGGGVNGGSSNKNNFSMAPKPHFYNPFTNSSAAC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03474 275 MobiDBLite consensus disorder prediction 27 52 - -
Trre16g03474 275 FunFam Homeobox-leucine zipper protein 18 110 186 - -
Trre16g03474 275 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Trre16g03474 275 SMART HOX_1 123 185 IPR001356 GO:0003677
Trre16g03474 275 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Trre16g03474 275 Gene3D - 129 179 - -
Trre16g03474 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 19 247 - -
Trre16g03474 275 CDD homeodomain 125 182 IPR001356 GO:0003677
Trre16g03474 275 Coils Coil 187 214 - -
Trre16g03474 275 Coils Coil 99 119 - -
Trre16g03474 275 SMART halz 181 224 IPR003106 GO:0006355|GO:0043565
Trre16g03474 275 SUPERFAMILY Homeodomain-like 120 182 IPR009057 -
Trre16g03474 275 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Trre16g03474 275 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03474 Trre-Chr16 37573406 37574751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03474 1 275 Homeobox Transcription Factor Family AT4G37790 60.554 1.61e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g03474 Homeodomain 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03474 K09338 - gmx:100784937 340.502