Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03471 ATGGCTAGAAAAAAGGTGAAGCTTGCTTTCATTGTTAATGATGCTGCTAGAAAAGCATCATTTAACAAAAGAAAAACGAATCTATTGAAGAAGGTTGATGAAATAAGCACTCTGTGCGGAATTGAAGCGTGTGCCATAGTATATGGTCCTTTTGAGCCACAACCTGATATTTGGCCAACCCCTTTGGAAGTCCAAAATGTGCTCTCAAAATTCAGATCACTGACTGAATTTGAGCAGAATAGGAACAAATTGAATCAAGAGGATTTTTTGAAACAAAGAATTTCGAAGGCCCAAGAACAACTTATGAAACTGAGGAGAGAAAATATGGAGAACGAGATGAGAGTGCTCCTGTATCATTCTATTGGACATAGTAGAATTATGCGCGAAACTATATCAATAGATGAATCAAATGTTCTTTGTCAGTTGATTGACCAAAATTTAAAGGACATAGGTAGAAGATTGGAAGCTGGCAATAATAATATTGGGCAAAGTGAAATCATGTCTGCTCCAACTCAAGGCCAACTTCAAATGGCACCACCACCGCCGGCTGCACCGACAACAACATCGATCAATGATGAACTAACTATGAGGGTGGATCATGGTCATACTGGGATGACTATGAATGATGCTGACATCCTGCAAAGGCAGTTGGATATGGACTTGATGCTGATTGGAAATGGGGATGATACAATTTCATTTGGTCATCTTCATGATGCAAATCTTCAAAATGGATTTTGGCCTAATATGTTTCCTTAA 756 0.3862 MARKKVKLAFIVNDAARKASFNKRKTNLLKKVDEISTLCGIEACAIVYGPFEPQPDIWPTPLEVQNVLSKFRSLTEFEQNRNKLNQEDFLKQRISKAQEQLMKLRRENMENEMRVLLYHSIGHSRIMRETISIDESNVLCQLIDQNLKDIGRRLEAGNNNIGQSEIMSAPTQGQLQMAPPPPAAPTTTSINDELTMRVDHGHTGMTMNDADILQRQLDMDLMLIGNGDDTISFGHLHDANLQNGFWPNMFP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03471 251 PANTHER MADS BOX PROTEIN 3 123 - -
Trre16g03471 251 Coils Coil 80 114 - -
Trre16g03471 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre16g03471 251 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre16g03471 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g03471 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g03471 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g03471 251 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Trre16g03471 251 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Trre16g03471 251 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre16g03471 251 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03471 Trre-Chr16 37337947 37338702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03471 1 188 Type I MADS-box Gene Family AT5G48670 45.361 6.88e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g03471 SRF-TF 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03471 - - mtr:11434260 230.72