Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03461 ATGAAGAAACCGCTCTCACTCTCAAAGGAAAAATTATGTCTTTCTGGTCCACCAGCAGTGGGAAAAACGAGTATTGGTTGTTCAATTGCACGTGCCTTGAACCGTAAGTTCTTCCGATTCTCTGTTGGAGGATTAGCTGATGTGGATGAAATCAAGGCTCAGGCAACATGGACACGTGATTCAGTTGGAGATAAGCAGAATGCTTCAAGATTTGATCCAATGGGAATAGTTTCTGCACCTTCTTTACTTCCAAGATCAGGTGGTAGCTCCTCAAAACAGAAAAGTGAGAAAACACGTTACTCCGATCGTGTAACTTCTTTACACGAATTGCTTCCGAATCCAGAAGTGGTTAGTCAAGCTTATATTCTAGATGACATCATTGACTATGTTAATTACTTGCAAATTCAAGTAAAGAAAATAAGTGGAAGTAAATTGCAAGCTGATTCAAATGCTATACCACTAGTTTTTCATGGGGTACATATCTTTTCTTATATTCAGTAG 501 0.3892 MKKPLSLSKEKLCLSGPPAVGKTSIGCSIARALNRKFFRFSVGGLADVDEIKAQATWTRDSVGDKQNASRFDPMGIVSAPSLLPRSGGSSSKQKSEKTRYSDRVTSLHELLPNPEVVSQAYILDDIIDYVNYLQIQVKKISGSKLQADSNAIPLVFHGVHIFSYIQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03461 166 Gene3D - 1 74 IPR027417 -
Trre16g03461 166 MobiDBLite consensus disorder prediction 62 100 - -
Trre16g03461 166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 54 IPR027417 -
Trre16g03461 166 PANTHER LON PROTEASE 12 54 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Trre16g03461 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 144 IPR036638 GO:0046983
Trre16g03461 166 CDD bHLH_AtbHLH_like 97 141 IPR045239 -
Trre16g03461 166 Pfam ATPase family associated with various cellular activities (AAA) 12 46 IPR003959 GO:0005524|GO:0016887
Trre16g03461 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03461 Trre-Chr16 37121961 37124633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03461 93 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 43.396 9.72e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03461 K08675 - cam:101507064 145.976