Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03460 ATGCTCCCTCTTCTCTCATACCTCATTTTCTTCCTCCTCCTTACATTCAACTCAGTTTCCACAACTCACATAATCTCAGAATACCACACATTACTCTCATTCAAATCATCTTCCATAACTAACGACCCAACAAACATCCTCTCCTCATGGAACCCAAAAACACCCTACTGTTCCTGGCACGGCATAACATGTGGCCAACACCGCCACGTCATCTCCATCAACCTCTCTTCTCTCACTCTCACCGGAACACTTTCCGACGACATTTCCAATCTCCCTTTTCTCACTAACCTTTCTCTCGCCGACAACAAATTCTCTGGCCCAATTCCCTCTTCTTTCTCCTCTCTCATTTCTCTTCGTTACCTTAACCTCTCCAACAATGTCTTCAATGGTACTTTTCCTTCTCAACTATCTAATCTCTTCAATCTTCAAGTTCTTGATCTTTACAATAACAACATGACTGGTACTCTTCCGTTATCTGTTACTAAAATGAGTTTTCTTCGTCATTTGCATCTGGGTGGGAATTTTTTCACCGGAAAAATTCCGCCGGAGTATGGTCTTTGGACTCATCTTGAATATCTTGCTGTTTCTGGTAATGAGCTTTCTGGACCCATTCCGCCGGAGATCGGTAACCTTACTTCGCTTAAAGAGCTTTACATTGGTTACTATAATACATACGACGGTGATATTCCGCCGGAGATTGGTAACTTATCGGAGCTGGTGAGGTTGGATGCTGCTTACTGTGGTTTGACCGGTGAAGTTCCGGCGGAGTTGGGTAAGCTTCAGAAGTTAGATACTTTGTTTCTTCAAGTGAATGCACTTTCTGGGTCACTTACGCCGGAGCTCGGAAACTTGAAAAGCTTGAAATCTATGGATTTGTCTAACAACGCTTTCTCCGGTGAAGTTCCGGCGAGTTTTGCTGAGCTTAAAAATCTTACCCTTTTGAACCTTTTTAGAAATAAACTTCATGGTGCTATACCGGAGTTTATCGGCGAGATGCCGGCGCTTGAAGTGTTGCAGATTTGGGAGAATAACTTCACAGGAAGTATTCCTCAGAATTTAGGGAAGAATGGAAAACTTACACTTGTTGATGTTTCTTCAAACAAGTTAACTGGTTCACTTCCTCCTAATATGTGTTTTGGGAATAAGCTTCAAACTTTAATAGCTTTAGGGAATTTTCTTTTTGGTCCTATTCCAGATTCACTTGGAAAGTGTAAATCTTTAAGTAGAATTAGAATGGGTGAGAATTTTCTAAATGGGTCAATTCCAAAAGGACTTTTTGGTCTTCCAGAGCTTACACAAGTTGAACTTCAAGATAATCTTTTATCAGGAAACTTTCCTCAACCTGTTTCAATGTCTCCAAATCTTGGTCAAGTTACTCTTTCCAACAATAAACTTTCTGGTCCATTACCACCTTCCGTTGGGAACTTCACAAGTGTTCAAAAGCTTCTTCTTGATGGGAATCAGTTTTCAGGTAAAATCCCTTCTGAGATTGGAAAGTTGCAACAGCTTTCAAAGATTGATTTTAGTCATAATAAATTCTCTGGTCCTATTGCTCCTGAGATTAGTCATTGTAAGCTTTTAACTTTTGTTGATCTTAGCCGAAACGATCTTTTGGGTGAGATTCCAAAGGAAATTACTAGCATGAGGATATTGAATTACTTGAACCTTTCTAGGAATCATCTTGTTGGTACTATTCCAGGTTCTATTGCTTCAATGCAAAGCTTAACTTCTGTTGATTTTTCATATAATAATCTAACTGGTTTGGTTCCTGGTACTGGTCAATTTAGTTACTTTAACTACACTTCTTTCCTTGGTAACCCTGAACTTTGTGGACCTTATTTGGGTCCTTGCAAAGATGGTGTTGCTAATGGTCCTCACAAACCTCATGTTAAAGGACCATTATCTTCTACTGTGAAGCTTTTGCTTGTTATTGGATTGCTTGTGTGTTCTGCTGTGTTTGCTGTTGCTACAATTTTCAAAGCCCGGTCTTTGAAAAAGGCTAGCGAAGCTCGTGCGTGGAAACTAACCGCATTCCAGCGTTTGGACTTCACGGTTGATGATGTTCTTGATTCCTTGAAAGAGGATAATATCATAGGAAAAGGTGGTGCTGGCATTGTTTACAAAGGCGCAATGCCTAATGGTGATCTTGTTGCGGTGAAAAGATTACCGGCTATGAGTAGAGGCTCTTCACATGATCATGGTTTTAATGCTGAGATTCAAACTTTGGGCCGGATTCGACACCGACACATTGTTAGATTATTGGGATTTTGTTCAAACCATGAGACAAATCTTTTGGTTTACGAGTACATGCCTAATGGAAGTTTAGGTGAAGTTCTTCATGGTAAGAAAGGTGGTCATTTGCATTGGGATACAAGGTACAAAATTGCTGTGGAATCTGCAAAGGGACTTTGTTATCTTCATCATGATTGTTCACCACTTATCGTTCATCGTGACGTAAAATCAAACAATATCTTACTTGATTCAAGTTTTGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGCAAGATTCTGGAACTTCTGAATGCATGTCTGCTATTGCTGGTTCTTATGGATACATAGCTCCAGAGTATGCATACACATTGAAAGTCGATGAAAAAAGCGATGTCTACAGCTTCGGTGTGGTACTCTTAGAACTCGTAGCAGGGCGAAAACCAGTTGGAGAATTCGGCGATGGAGTAGACATTGTACAATGGGTGAGAAAAATGACAGATTCAAACAAAGAAGGTGTTCTAAAAGTTCTTGATCCTAGACTTCCTTCGGTTCCGCTTCATGATGAGGTGATGCATGTGTTCTATGTAGCCATGTTATGTGTTGAAGAACAAGCCGTAGAAAGACCAACAATGCGCGAAGTCGTTCAAATGCTTACTGAACTTCCAAAACCATCACCTAGCTCAAAACATGTTGAAGAAGACTTAACAATGTTAACAATCACTGAATCTTCTTTGTCTTCATCAAACAGTTTAGAGTCTCCAGAAAAAGATCCTAAAGATCTTCTTAGTATATGA 3033 0.3999 MLPLLSYLIFFLLLTFNSVSTTHIISEYHTLLSFKSSSITNDPTNILSSWNPKTPYCSWHGITCGQHRHVISINLSSLTLTGTLSDDISNLPFLTNLSLADNKFSGPIPSSFSSLISLRYLNLSNNVFNGTFPSQLSNLFNLQVLDLYNNNMTGTLPLSVTKMSFLRHLHLGGNFFTGKIPPEYGLWTHLEYLAVSGNELSGPIPPEIGNLTSLKELYIGYYNTYDGDIPPEIGNLSELVRLDAAYCGLTGEVPAELGKLQKLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNAFSGEVPASFAELKNLTLLNLFRNKLHGAIPEFIGEMPALEVLQIWENNFTGSIPQNLGKNGKLTLVDVSSNKLTGSLPPNMCFGNKLQTLIALGNFLFGPIPDSLGKCKSLSRIRMGENFLNGSIPKGLFGLPELTQVELQDNLLSGNFPQPVSMSPNLGQVTLSNNKLSGPLPPSVGNFTSVQKLLLDGNQFSGKIPSEIGKLQQLSKIDFSHNKFSGPIAPEISHCKLLTFVDLSRNDLLGEIPKEITSMRILNYLNLSRNHLVGTIPGSIASMQSLTSVDFSYNNLTGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVANGPHKPHVKGPLSSTVKLLLVIGLLVCSAVFAVATIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDSLKEDNIIGKGGAGIVYKGAMPNGDLVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVESAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVAGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHDEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPSPSSKHVEEDLTMLTITESSLSSSNSLESPEKDPKDLLSI 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03460 1010 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Trre16g03460 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 85 328 - -
Trre16g03460 1010 Gene3D Transferase(Phosphotransferase) domain 1 770 989 - -
Trre16g03460 1010 ProSiteProfiles Protein kinase domain profile. 692 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03460 1010 SMART LRR_typ_2 284 307 IPR003591 -
Trre16g03460 1010 SMART LRR_typ_2 115 139 IPR003591 -
Trre16g03460 1010 SMART LRR_typ_2 308 332 IPR003591 -
Trre16g03460 1010 SMART LRR_typ_2 572 595 IPR003591 -
Trre16g03460 1010 SUPERFAMILY Protein kinase-like (PK-like) 685 964 IPR011009 -
Trre16g03460 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 770 981 - -
Trre16g03460 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 336 621 - -
Trre16g03460 1010 SUPERFAMILY RNI-like 72 394 - -
Trre16g03460 1010 Gene3D Ribonuclease Inhibitor 348 621 IPR032675 -
Trre16g03460 1010 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre16g03460 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Trre16g03460 1010 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515
Trre16g03460 1010 Pfam Protein kinase domain 694 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03460 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 661 769 - -
Trre16g03460 1010 SUPERFAMILY L domain-like 357 617 - -
Trre16g03460 1010 Gene3D Phosphorylase Kinase; domain 1 657 769 - -
Trre16g03460 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 382 965 - -
Trre16g03460 1010 Gene3D Ribonuclease Inhibitor 86 347 IPR032675 -
Trre16g03460 1010 Gene3D Ribonuclease Inhibitor 23 85 IPR032675 -
Trre16g03460 1010 SMART serkin_6 692 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03460 1010 MobiDBLite consensus disorder prediction 988 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03460 Trre-Chr16 37041992 37045584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03460 17 1010 Receptor kinase-like Gene Family AT5G65700 78.557 0.0 1570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre16g03460 Pkinase 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03460 - - gmx:547592 1665.2