Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03458 ATGCCTCAATTACTTGGAATAGAGGATGCTTTGTTTAATGATCATGATTACCCAATGGATTCATTTGCAATCCAATATGATGATATGGCATATTTCAAGTCTTTCTCAGAATCACCACCGGAGAGTTCTTATTCCTCTCCTAATAACAATCGTAAGCGCTTTCATTCCGAAAGCACGCAAAACAGCTCTTTCCCGATTCATAGTAGTCCTGATCAATCCGTTGCTTCAGCAACACCGCCAACTAAAATACTCAAAGCTTCTTCCAAAATCATTTCATTCGACCATTCCGATACATTTTCCGATGCAAAGGTTAAGAAGCCTAAAGCCGAGATGGAGTATGGTGAAAACATGAATTTTGCAAGTTTGATTTCTCAAGGTGAGAACAAGGTCGTGAATAGAAACCCAATCCAGGCTCGAGATCATGTAATGGCCGAAAGAAAACGTAGGGAAAAGCTTAGCCAGAGATTCATTGCCCTTTCCTCCATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAATCATTTGAACCAACTAAAGGAACGAGTGAAGACTTTGGAGGAACAAGTAGCCGATAAAAAAGTCGAATCCGCAGTATTTGTGAAGAGATCTATTATCTTCGCCGATGATGATAGCTCCTCTGGCGACGAAAATTCAGATCAATCACTCCCGAAAATCGAAGCAAGAGTTTCTGGTAAAGACATGCTCATCAGAATCCACTGCGACAAACACACTGGCCGAACCGCGACCACAATACTCAACGAACTCGAAAAGCACCATCTCACTGTTCACACTAGTTCTATTTTGCCATTTGGAAATAACTATCTTGACATAACCATTGTTGCTCAGATGAACAAAGAATATTGCATAACAATAAAGGATCTCATAAGAAGTATAAGTCAGGTTTTGAGGAAGCTCATTTGA 942 0.4013 MPQLLGIEDALFNDHDYPMDSFAIQYDDMAYFKSFSESPPESSYSSPNNNRKRFHSESTQNSSFPIHSSPDQSVASATPPTKILKASSKIISFDHSDTFSDAKVKKPKAEMEYGENMNFASLISQGENKVVNRNPIQARDHVMAERKRREKLSQRFIALSSILPGLKKMDKATILEDAINHLNQLKERVKTLEEQVADKKVESAVFVKRSIIFADDDSSSGDENSDQSLPKIEARVSGKDMLIRIHCDKHTGRTATTILNELEKHHLTVHTSSILPFGNNYLDITIVAQMNKEYCITIKDLIRSISQVLRKLI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03458 313 Coils Coil 175 202 - -
Trre16g03458 313 PANTHER BHLH TRANSCRIPTION FACTOR 29 311 - -
Trre16g03458 313 MobiDBLite consensus disorder prediction 36 79 - -
Trre16g03458 313 Pfam Helix-loop-helix DNA-binding domain 140 186 IPR011598 GO:0046983
Trre16g03458 313 Gene3D - 128 201 IPR036638 GO:0046983
Trre16g03458 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 203 IPR036638 GO:0046983
Trre16g03458 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Trre16g03458 313 SMART finulus 142 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03458 Trre-Chr16 36927706 36929357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03458 69 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.544 5.73e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g03458 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03458 - - tpra:123921001 533.872