Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03457 ATGATTCAAATTTCATCAACCAACTACATGCCTCAATTACTTGGAATAGAGGATGCTTTGTTTAATGATCATGATTACCCAATGGATTCATTTGCAATCCAATATGATGATATGGCATATTTCAAGTCTTTCTCAGAATCACCACCGGAGAGTTCTTATTCCTCTCCTAATAACAATCGTAAGCGCTTTCATTCCGAAAGCACGCAAAACAGCTCTTTCCCGATTCATAGTAGTCCTGATCAATCCGTTGCTTCAGCAACACCGCCAACTAAAATACTCAAAGCTTCTTCCAAAATCATTTCATTCGACCATTCCGATACATTTTCCGATGCAAAGGTTAAGAAGCCTAAAGCCGAGATGGAGTATGGTGAAAACATGAATTTTGCAAGTTTGATTTCTCAAGGTGAGAACAAGGTCGTGAATAGAAACCCAATCCAGGCTCGAGATCATGTAATGGCCGAAAGAAAACGTAGGGAAAAGCTTAGCCAGAGATTCATTGCCCTTTCCTCCATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAATCATTTGAACCAACTAAAGGAACGAGTGAAGACTTTGGAGGAACAAGTAGCCGATAAAAAAGTCGAATCCGCAGTATTTGTGAAGAGATCTATTATCTTCGCCGATGATGATAGCTCCTCTGGCGACGAAAATTCAGATCAATCACTCCCGAAAATCGAAGCAAGAGTTTCTGGTAAAGACATGCTCATCAGAATCCACTGCGACAAACACACTGGCCGAACCGCGACCACAATACTCAACGAACTCGAAAAGCACCATCTCACTGTTCACACTAGTTCTATTTTGCCATTTGGAAATAACTATCTTGACATAACCATTGTTGCTCAGATGAACAAAGAATATTGCATAACAATAAAGGATCTCATAAGAAGTATAAGTCAGGTTTTGAGGAAGCTCATTTGA 969 0.3983 MIQISSTNYMPQLLGIEDALFNDHDYPMDSFAIQYDDMAYFKSFSESPPESSYSSPNNNRKRFHSESTQNSSFPIHSSPDQSVASATPPTKILKASSKIISFDHSDTFSDAKVKKPKAEMEYGENMNFASLISQGENKVVNRNPIQARDHVMAERKRREKLSQRFIALSSILPGLKKMDKATILEDAINHLNQLKERVKTLEEQVADKKVESAVFVKRSIIFADDDSSSGDENSDQSLPKIEARVSGKDMLIRIHCDKHTGRTATTILNELEKHHLTVHTSSILPFGNNYLDITIVAQMNKEYCITIKDLIRSISQVLRKLI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03457 322 CDD bHLH_AtNAI1_like 147 219 - -
Trre16g03457 322 Gene3D - 137 210 IPR036638 GO:0046983
Trre16g03457 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Trre16g03457 322 SMART finulus 151 200 IPR011598 GO:0046983
Trre16g03457 322 Coils Coil 184 211 - -
Trre16g03457 322 MobiDBLite consensus disorder prediction 46 88 - -
Trre16g03457 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 212 IPR036638 GO:0046983
Trre16g03457 322 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Trre16g03457 322 PANTHER BHLH TRANSCRIPTION FACTOR 38 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03457 Trre-Chr16 36927679 36929357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03457 78 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.544 5.58e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g03457 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03457 - - tpra:123921001 550.821