Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03456 ATGGAAGAATCATGGACTAATTGGTTATGTGATATGGAACCAGATGATTACAGCTTCATCAACCAATCAAGCATAAACACAGACATTAATCATGTTAGTAATTTAGAGAGACCTTCCAAGTTACTCAAAACAACTTCTTCTTCTTCCACTTGCTCATACATTCTTACATTTGAAAATGAGAATCCACCACCAATAAAGGTTGAACCACCTTTGAAGACAAAAACCAAAGTTGTGAATTCAAGAAAGGTTAATATCCAAGAGAGCAACAAGAAGAACGGTTCATTTTCCAAATCTACAAGTCCTCACACACCAGATCACATAATTGCTGAGAGAATAAGAAGAGAAAAGATTAGCCAACAATTCATAGCTCTTTCAGCCCTTATTCCAAACCTCAAAAAGATGGACAAAGCCTCTATATTAGGTGATGCTATAAAGTATGTGAAGGAGCTTAAAGAGCAAGTGAAAGTGTTGGAAGAGCAAAGCAAAAGAAAAAGTGTAGAATCAGTTGTAGTTGTGAAGAAATTATCTCAACTTTCTGTGGATGAAGATGTCTCAGACACTTCCTCAGATTCATGTGATGAAAACTCAGATGAAACCTCAAAAACATATTTGTCATCACTGCCAGAAGTTGAAGCTAGGTTGTCGGGGAAGAATGTGTTAATAAGAATTCTCTGTGAGAAGAAAGATAAAGGAGTGATGGTGAATGTATATAGAGAGATAGAGAAACTTCATCTCTCAGTTATCAATGCTAGTTCCTTTTCCTTTGGTTCCTCTGTTCTTGCCATAACCATCGTCGCCCAGATGGAGGAAGAGTTGAACATGAGCATCGAGAAAGTGGCAAAACAAGTGAGATTTGGACTGGTGCAATTGAATTAG 876 0.3721 MEESWTNWLCDMEPDDYSFINQSSINTDINHVSNLERPSKLLKTTSSSSTCSYILTFENENPPPIKVEPPLKTKTKVVNSRKVNIQESNKKNGSFSKSTSPHTPDHIIAERIRREKISQQFIALSALIPNLKKMDKASILGDAIKYVKELKEQVKVLEEQSKRKSVESVVVVKKLSQLSVDEDVSDTSSDSCDENSDETSKTYLSSLPEVEARLSGKNVLIRILCEKKDKGVMVNVYREIEKLHLSVINASSFSFGSSVLAITIVAQMEEELNMSIEKVAKQVRFGLVQLN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03456 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Trre16g03456 291 PANTHER BHLH TRANSCRIPTION FACTOR 22 288 - -
Trre16g03456 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 171 IPR036638 GO:0046983
Trre16g03456 291 Coils Coil 140 167 - -
Trre16g03456 291 SMART finulus 107 156 IPR011598 GO:0046983
Trre16g03456 291 Pfam Helix-loop-helix DNA-binding domain 106 150 IPR011598 GO:0046983
Trre16g03456 291 MobiDBLite consensus disorder prediction 84 103 - -
Trre16g03456 291 Gene3D - 103 174 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03456 Trre-Chr16 36914756 36917570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03456 6 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 40.181 9.44e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g03456 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03456 - - mtr:11405744 379.407