Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03452 ATGGAGGAAATCAACAACACACCAATCAACAACGTCTCAGAATCCACCAGCTGGTTATCTGATTTGGAAATGGATGAGTGCAATATATTTCCTGAGGAATGTAACCTGAATTTCCTTGATGCTGATGAGAAAGAGTTTCTTTCACATAACATAGCTACCGTCTTTCAAGAACAAACACAACAACAATGTTTGACTTCAGAGTCAACTCTCAGTAACTCACTCACTGATGAAACAAATTTTGACTCTTTTGACTTTGATTTTGAAACTGAGAGACCAACCAAGCAACTCAAAACAATTGATCAAAGTGACACAATCACTGAAACCTTTTCACCAAAACTTTCTCCTTCTTCATCTATTTCATCTTTTCAGTCTCAGATTCTGTCCTTTGAAAACTCACCAAATTCACCTGCTATCAACACCCCCCAATTTCATGGATTCACTCCTACCTTAAACTCAAAACAGAATGAAACAGTGTCAGTGTTTCCACCCCAATTGGGAAACATGAATGTTTCAACTCAAATTCCAAAAGGGTCATCAAAAAATCAAAACTTGGAAACAAAAACCTCACAAACCAAAAGGTCTAGAGCTCATGGTCATGATCATATCATGGCTGAAAGAAAACGTAGAGAAAAACTCAGCCAAAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAATCTAAAGAAGATGGACAAAGCTTCTGTATTAACTGACTCTATCAAATACATGAAAGAGCTTAAAGAGCGTTTGAAAGTTTTGGAAGAACAGAACAAGAAACAAGAAGCAGAGTCGGCGGTTGTTCTAAACAAACAAAAACTCTGTAGCGATGATGTCATTGACAACTCTTCATCATGTGATGAGAGCATTGAAGGTGCCAAAGAATCAGTCTTACAAGTGGAAGCAAGAGTGTCAGGGAAGGAGATGCTGATTCGGATTCATTGCCAGAAGCAGAAGGGACTTTTGGTTAAAATCATGGCTGAGATTCAAAGCTTTCAACTATTTTTTGTGAATAGCAGTGTTGTACCCTTTGGGGATTCCATGGACATTACTATCATTGCTCAGATGGGTGAAGGGTACAACTTGAGCATTAAGGAACTTGTGAAGAACCTGCGGATGGCTGCATTGAAGTTTATTAGTATGTCATCATAG 1146 0.3848 MEEINNTPINNVSESTSWLSDLEMDECNIFPEECNLNFLDADEKEFLSHNIATVFQEQTQQQCLTSESTLSNSLTDETNFDSFDFDFETERPTKQLKTIDQSDTITETFSPKLSPSSSISSFQSQILSFENSPNSPAINTPQFHGFTPTLNSKQNETVSVFPPQLGNMNVSTQIPKGSSKNQNLETKTSQTKRSRAHGHDHIMAERKRREKLSQSFIALAALVPNLKKMDKASVLTDSIKYMKELKERLKVLEEQNKKQEAESAVVLNKQKLCSDDVIDNSSSCDESIEGAKESVLQVEARVSGKEMLIRIHCQKQKGLLVKIMAEIQSFQLFFVNSSVVPFGDSMDITIIAQMGEGYNLSIKELVKNLRMAALKFISMSS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03452 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Trre16g03452 381 Coils Coil 235 269 - -
Trre16g03452 381 Gene3D - 181 262 IPR036638 GO:0046983
Trre16g03452 381 MobiDBLite consensus disorder prediction 172 189 - -
Trre16g03452 381 MobiDBLite consensus disorder prediction 172 201 - -
Trre16g03452 381 Pfam Helix-loop-helix DNA-binding domain 201 245 IPR011598 GO:0046983
Trre16g03452 381 PANTHER BHLH TRANSCRIPTION FACTOR 66 376 - -
Trre16g03452 381 SMART finulus 202 251 IPR011598 GO:0046983
Trre16g03452 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 262 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03452 Trre-Chr16 36808463 36811157 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03452 15 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.398 4.58e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g03452 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03452 - - gmx:100788128 406.371