Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03449 ATGGAAGAAATCAACAACACACCAATGAACATATCAGAAACCAGCAAATGGGTATCTGATTTGGATATGGATGAATACAATTTATTTCCTGAGGAATGCAACCTTAATTTTCTAGATGCTGATGAGGAAGAGTTTCTTTCACATGACATAGTTACTACTACTGTCTTTCAAGAACAACAAACCCAACAACAACCTTTGACTTCAGAGTCCAAAACTCTCAACAACTCATTCACTGATGAAACAAATTTTGAGACTTTTAACTTTGATTTTGAAATTGAGAGACCAATAAATCAGCTGAAAACAACTAATGACAGCGACAAAATCACTGAAACCTTGTCACCAAAACTTTCTCCATCATCATCTAACTCATCATTTCAGTCTCTTATTCTATCTTTTGAAAACCCACCAAACTCACCTCCTACTATCAACACCCCCCAAATTTATGGTTTTGACCCTACCTTGAACACAAAACAGAACGAAACAGAGTCATTGTCTTCACCCCAATTGGGAAACATACATGTCTCAACTCAAAATCCAAAAGGGTCACCGAAAAATGAAAACTTGGAAACAAAAACATCACAAAACAAAAGGTCTAGAAATCATGGTCAAGATCATATCATGGCTGAGAGAAAACGTAGAGAAAAACTCAGCCAAAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAATCTAAAGAAGATGGATAAAGCTTCTGTATTAACTGACTCTATCAAATACTTGAAAGAGCTTAAACAGCGTTTGGAAGTTTTGGAAAAACAGAACAAGAAAACAGAAGCAGAGTCGGTGGTTGTTATGAAAAAACAAGACCTATGCATCAATGATGATAACTCATCATCTGACGAGAGTATTGAAGGTGCTGTTGATACCAAAGAATCAGTCTTACAAGTGGAAGCAAGAGTTTCAGGGAAAGAGATGCTGATTCGGATTCATTGCCAGAAACACAAGGGAGTTCTTGTTAAAATCATGGCTGAAATTCAAAGCTTTGAATTATTTGTTGTGAATAGCAGTGTCTTACCCTTTGGAAATTCTATCCTCGACATTACTATAATTGCTGAGGTGGGCGAAGGGTACAAGTTGAGCACAAAGGAACTTGTGAGGAACCTACGCATGGCAACATCCCCAGATGAATGCGATGCTTTTCTAGCATGTGATAATGCTCCAGCGCACAGTGTACGTTCTTCAGAAGATGTTTATATTATTGAAGGATTTGGTAGGAATATTTTCATCTTCACACGGCTTAATTTAATCGATTTTGATGATAAATAG 1284 0.3707 MEEINNTPMNISETSKWVSDLDMDEYNLFPEECNLNFLDADEEEFLSHDIVTTTVFQEQQTQQQPLTSESKTLNNSFTDETNFETFNFDFEIERPINQLKTTNDSDKITETLSPKLSPSSSNSSFQSLILSFENPPNSPPTINTPQIYGFDPTLNTKQNETESLSSPQLGNIHVSTQNPKGSPKNENLETKTSQNKRSRNHGQDHIMAERKRREKLSQSFIALAALVPNLKKMDKASVLTDSIKYLKELKQRLEVLEKQNKKTEAESVVVMKKQDLCINDDNSSSDESIEGAVDTKESVLQVEARVSGKEMLIRIHCQKHKGVLVKIMAEIQSFELFVVNSSVLPFGNSILDITIIAEVGEGYKLSTKELVRNLRMATSPDECDAFLACDNAPAHSVRSSEDVYIIEGFGRNIFIFTRLNLIDFDDK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03449 427 Gene3D - 185 266 IPR036638 GO:0046983
Trre16g03449 427 Coils Coil 239 266 - -
Trre16g03449 427 SMART finulus 206 255 IPR011598 GO:0046983
Trre16g03449 427 MobiDBLite consensus disorder prediction 190 206 - -
Trre16g03449 427 MobiDBLite consensus disorder prediction 101 206 - -
Trre16g03449 427 PANTHER BHLH TRANSCRIPTION FACTOR 57 378 - -
Trre16g03449 427 Pfam Helix-loop-helix DNA-binding domain 204 249 IPR011598 GO:0046983
Trre16g03449 427 MobiDBLite consensus disorder prediction 101 189 - -
Trre16g03449 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 266 IPR036638 GO:0046983
Trre16g03449 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03449 Trre-Chr16 36793882 36797296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03449 50 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.860 1.18e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g03449 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03449 - - gmx:100788128 392.504