Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03441 ATGGCTTCATCATCAACAAGAATGACAAGGGCTGCTAATGAAAGACAAAGAAAGAAAAGCTTTCAGACTATTGTTGATCCCCATCAGGAAGAAATTCTTATTCCCGCTAAATTCAAATCTGATTGGCGTCATAAGTTTCAGTATGACCCAGTTGCATTTTTGGTTCACCCCTCTGGAAACACAGCTTGGCTTGAAATCTACCTAGATGAAGATAAAAGTTACATGACTTCAGGAAAAATGGCTTCAATTTTATTTGGTATAACAGAACCAACCCAGGTAATCCTTACTTATCACGAAAACAACTCAACATTTACTTTGATAAATAATGCCAATGTAACAAGCATTGATGAAGTTGAAGAAGAGTTGGGAGAAACAATCTTCCCATTTAACGACAACACTTATACCTTACATCCCTATGAAGACGATCAGTTGTTTGGTTGGGAACAGCAAATAAGTAAGGCTATGGCATGTAACACAAAAAATCAAGTTTTGAGGATACCGCCAAAAACTGCTAACAGTGCATTGCGAGGAAGGAAGAACATAATCATCAAAACACAACATCAATTGGATGGAACCAAATGGAAAATCAATACTTATAAAAGAGAAAATGGAAGACAGGAAAAACATTTTACTGAAGGATGGTATGTATTCAAGAAGGCGAACAATCTTCGCGAAGGAGACAAATTGCAATTTCAGCTTTCTGATCCAGCTGAAGTTATGGTAGTCGACATTGTTCGCTACAACAATTCAGCATAA 756 0.369 MASSSTRMTRAANERQRKKSFQTIVDPHQEEILIPAKFKSDWRHKFQYDPVAFLVHPSGNTAWLEIYLDEDKSYMTSGKMASILFGITEPTQVILTYHENNSTFTLINNANVTSIDEVEEELGETIFPFNDNTYTLHPYEDDQLFGWEQQISKAMACNTKNQVLRIPPKTANSALRGRKNIIIKTQHQLDGTKWKINTYKRENGRQEKHFTEGWYVFKKANNLREGDKLQFQLSDPAEVMVVDIVRYNNSA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03441 251 Gene3D - 145 249 IPR015300 -
Trre16g03441 251 Pfam B3 DNA binding domain 158 246 IPR003340 GO:0003677
Trre16g03441 251 SUPERFAMILY DNA-binding pseudobarrel domain 161 241 IPR015300 -
Trre16g03441 251 ProSiteProfiles B3 DNA-binding domain profile. 149 248 IPR003340 GO:0003677
Trre16g03441 251 CDD B3_DNA 164 246 IPR003340 GO:0003677
Trre16g03441 251 SMART B3_2 151 248 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03441 Trre-Chr16 36560580 36562221 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03441 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03441 - K06295 tpra:123886203 206.453