Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03439 ATGGCTGGTTTGGATTTAGGAAATGCATCAAGCTTTATGCAAAACCTTCACAGACAAAACTTACACCTTCAGCAACAACAACAGCAACATCATCAACACCAACACGATTCTGACGAACAGCAAGAGTCGAATCGTGTTGGTGGGAGTGGTGCAGCTCCGTTTTCATCAAACGATGAAGATGACCGAAGCCAAGGCTTGGAGCTAGGTTCAGCAGCCGGTCCAGGTGACGTGGTGGGACGCCGTCCACGCGGCAGACCACCGGGATCAAAAAACAAAGCAAAGCCGCCGGTGATCATCACCCGTGAGAGCGCCAACACTCTGAGGGCTCATATTCTTGAAGTAGCCAGCGGCTCCGATGTGTTTGAATGTGTAACTACCTACGCTCGCCGTCGTCAGCGTGGGATCTGTGTTTTAAGTGGAAGCGGAACCGTCACTAATGTAAGTCTCCGGCAACCAGCGGCGGCGGGTGGTGTTGTGACACTGAATGGAAGATTTGAGATATTGTCTTTGTCTGGATCTTTTCTGCCTCCACCAGCTCCTCCCGGAGCGACAAGCTTAACGATTTATCTCGCCGGAGGACAGGGACAAGTGGTCGGAGGAAGTGTGGTTGGTGAACTTATCGCAGCAGGACCGGTGATCGTGATTGCCGCTTCTTTTACTAATGTAGCTTATGAGAGATTGCCCTTGGAGGAAGAGGAGCAAGTTCAGATTCAAGCAGGAGGTGGTGGTGGTTCTCAAGGCTCTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGTGGAGGAAATAACAATCCATTTCCTGATCCTTCATCTGGTTTGCCATTTTTCAATCTGCCATTGAATATGCAAAATGTTCATCAGCTGCCTGTTGATGGTTGGGCGGGAAACAATTCAGCTGCACGTCAGCCTTTTTGA 912 0.5099 MAGLDLGNASSFMQNLHRQNLHLQQQQQQHHQHQHDSDEQQESNRVGGSGAAPFSSNDEDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTTYARRRQRGICVLSGSGTVTNVSLRQPAAAGGVVTLNGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLEEEEQVQIQAGGGGGSQGSGGGGGGGGGGGGNNNPFPDPSSGLPFFNLPLNMQNVHQLPVDGWAGNNSAARQPF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03439 303 Gene3D - 107 239 - -
Trre16g03439 303 MobiDBLite consensus disorder prediction 43 59 - -
Trre16g03439 303 MobiDBLite consensus disorder prediction 22 98 - -
Trre16g03439 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 283 IPR014476 GO:0003680
Trre16g03439 303 FunFam AT-hook motif nuclear-localized protein 107 234 - -
Trre16g03439 303 CDD DUF296 108 191 IPR005175 -
Trre16g03439 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 221 IPR005175 -
Trre16g03439 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 238 - -
Trre16g03439 303 MobiDBLite consensus disorder prediction 235 272 - -
Trre16g03439 303 ProSiteProfiles PPC domain profile profile. 104 240 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03439 Trre-Chr16 36547687 36548598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03439 1 303 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.780 9.05e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03439 - - pvu:PHAVU_003G230600g 362.844