Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03438 ATGGATTCCCGCTCACCACCACCACAACCACCACCACCACAATCAACCATCATGGTGGGACCCACATCTTACGCTCCAACAAACACTTCCATGATCAGCCCTAATTCCTCCACCACCAACGCCACCAACCTCATGGCACCAGCCACCGCTCGATTTCCTTTCTCCTCTTCTCAACAATCGGAGCCATTCTCCGTCACTCACGACAACAACGCTCCTCCTTCCTCTCCGTCTACTCTTGCTAAGAAAAAACGTGGCCGTCCGAGGAAATACTCCCCTGACGGTAACATTGCTCTTGGTTTGGCTCCTACTCATGTTTCTTCTCCTGCCGCTGCTACCTCCGCCTCCGCCGGTGATTCTGGTAACGCTGATGCTCCTCCTAAGAAACATAGAGGAAGACCTCCTGGTTCTGGGAAGAAACAGTTAGATGCCCTTGGTGCTGGTGGGACTGGATTCACTCCACACGTAATTGTGGTGGAGTCTGGTGAGGACATTACTGAAAAAGTCATGTCCTTTTTACAGATAGGGCCTCGGACGGTTGTTATTCTTTCTGCAGTTGGTGCAATCAGCAATGTAACCCTTCGACAGCCAACTTTATCTGGCGGTGTTGCAAGATTTGAGGGCCAATTTGAGATCATATCACTATCAGGTGATATGCAGCTATCTGAAAATAATGGTGAGCAAAGCAGAACAAGCAGTTTGTACGTTTCCCTTGCAGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGAATGCTAACTGCAGCGTCGGCTGTACAGGTCATTGTGGGTAGCTTTATAATGGATCAGAAAAAGTCAAGCTCGAGTATGGTGAAATCTGGACCTTCTTCAGCACCAACTTCCCAAATGTTGAACTTCGGAGCTCCTACGACTCCAACTAGTCCCACCTCTCAAGGGCCTTCAACCGAGTCCTCGGAAGAAAATGATCACAATAGTAACTTTAGTAGGGGTCCTGGAATCTACAATAATGCTAATCAACCTGTTCATAATAATATGCAGCAGATGTACCACCATCCACTATGGGCTGGTCAATCTCATCAGTGA 1065 0.4864 MDSRSPPPQPPPPQSTIMVGPTSYAPTNTSMISPNSSTTNATNLMAPATARFPFSSSQQSEPFSVTHDNNAPPSSPSTLAKKKRGRPRKYSPDGNIALGLAPTHVSSPAAATSASAGDSGNADAPPKKHRGRPPGSGKKQLDALGAGGTGFTPHVIVVESGEDITEKVMSFLQIGPRTVVILSAVGAISNVTLRQPTLSGGVARFEGQFEIISLSGDMQLSENNGEQSRTSSLYVSLAGADGRVLGGAVAGMLTAASAVQVIVGSFIMDQKKSSSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPGIYNNANQPVHNNMQQMYHHPLWAGQSHQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03438 354 MobiDBLite consensus disorder prediction 273 334 - -
Trre16g03438 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 266 IPR005175 -
Trre16g03438 354 MobiDBLite consensus disorder prediction 18 77 - -
Trre16g03438 354 MobiDBLite consensus disorder prediction 1 17 - -
Trre16g03438 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 320 IPR039605 GO:0003680
Trre16g03438 354 Gene3D - 153 279 - -
Trre16g03438 354 MobiDBLite consensus disorder prediction 1 146 - -
Trre16g03438 354 CDD DUF296 152 266 IPR005175 -
Trre16g03438 354 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Trre16g03438 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 267 - -
Trre16g03438 354 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Trre16g03438 354 SMART AT_hook_2 127 139 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03438 Trre-Chr16 36523225 36529118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03438 55 354 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 46.154 7.00e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03438 - - gmx:100789717 394.045